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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEK
LVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFE
SEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTII
AAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF

The query sequence (length=303) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iue:P 303 303 1.0000 1.0000 1.0000 0.0 7a6h:P, 7ae1:P, 7ae3:P, 7aea:P, 7d58:P, 7d59:P, 7dn3:P, 7du2:P, 7fji:P, 7fjj:P, 8ity:P, 8iuh:P
2 6eu0:P 298 224 0.2079 0.2114 0.2812 1.25e-21 6cnb:P, 6cnc:P, 6cnd:P, 6cnf:P
3 8ye0:C 290 49 0.0462 0.0483 0.2857 2.8 8ye0:A, 8ye0:B, 8ye0:D
4 1djo:A 330 131 0.0924 0.0848 0.2137 3.5 1djo:B, 1djp:A, 1djp:B, 4pga:A, 4pga:B, 6wyw:A, 6wyw:B, 6wyw:C, 6wyw:D, 6wyx:A, 6wyx:B, 6wyx:C, 6wyx:D, 6wyy:A, 6wyy:B, 6wyy:C, 6wyy:D, 6wyz:A, 6wyz:B, 6wyz:C, 6wyz:D, 6wz4:A, 6wz4:B, 6wz4:C, 6wz4:D, 6wz6:A, 6wz6:B, 6wz6:C, 6wz6:D
5 5k3o:A 328 47 0.0561 0.0518 0.3617 3.8 5k3o:B, 5k3o:C, 5k3o:D, 5k45:A, 5k45:B, 5k45:C, 5k45:D, 5k4g:A, 5k4g:B, 5k4g:C, 5k4g:D, 5k4h:A, 5k4h:B, 5k4h:C, 5k4h:D, 5k4h:E, 5k4h:F, 5k4h:G, 5k4h:H, 6rue:A, 6rue:B, 6rue:C, 6rue:D, 6ruf:A, 6ruf:B, 6ruf:C, 6ruf:D
6 1h65:A 257 67 0.0726 0.0856 0.3284 5.8 3bb1:A, 3bb1:B, 3bb1:C, 3bb1:D, 3bb1:E, 3bb1:F, 3bb1:G, 3bb1:H, 1h65:B, 1h65:C
7 7eiv:B 300 35 0.0396 0.0400 0.3429 6.7 7eiv:A, 7yse:A, 7yse:B
8 5mcp:E 387 39 0.0495 0.0388 0.3846 6.7 5mcp:G
9 3efo:B 767 100 0.0825 0.0326 0.2500 8.6 3eg9:B, 5kyu:B, 5kyw:B, 5kyx:B, 5kyy:B
10 2e5y:A 133 27 0.0363 0.0827 0.4074 9.3 2e5y:B, 7xkq:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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