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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPVEDGLVIETDSGPVEIVTKTAPPAFLADTFDTIYSGWHFRDDSTRDLERDDFDNPAMVFVDRGLDKWNAAMGVNGESC
ASCHQGPESMAGLRAVMPRVDEHTGKLMIMEDYVNACVTERMGLEKWGVTSDNMKDMLSLISLQSRGMAVNVKIDGPAAP
YWEHGKEIYYTRYGQLEMSCANCHEDNAGNMIRADHLSQGQINGFPTYRLKDSGMVTAQHRFVGCVRDTRAETFKAGSDD
FKALELYVASRGNGLSVEGVSVRH

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2c1d:A 264 264 1.0000 1.0000 1.0000 0.0 2c1d:C, 2c1d:G, 2c1d:E
2 1h31:A 261 262 0.5492 0.5556 0.5534 5.91e-98 1h31:C, 1h31:E, 1h31:G, 1h32:A, 1h33:A, 2oz1:A, 2oz1:C, 2oz1:E, 2oz1:G
3 3oa8:A 229 230 0.2500 0.2882 0.2870 2.86e-21 3oa8:C, 3oa8:E, 3ocd:A, 3ocd:C
4 4v2k:A 235 151 0.1326 0.1489 0.2318 1.25e-04 4wq7:A, 4wq8:A, 4wq9:A, 4wqa:A, 4wqb:A, 4wqc:A, 4wqd:A, 4wqe:A
5 1gjq:A 541 102 0.0871 0.0425 0.2255 0.17 1bl9:A, 1bl9:B, 1gjq:B, 5guw:M, 5guw:N, 1hzu:A, 1hzv:A, 1n15:A, 1n15:B, 1n50:A, 1n50:B, 1n90:A, 1n90:B, 1nir:A, 1nir:B, 1nno:A, 1nno:B, 6tpo:A, 6tsi:A, 6tsi:B
6 5lo9:A 471 51 0.0644 0.0361 0.3333 1.2 5lo9:B
7 1qdb:A 473 33 0.0492 0.0275 0.3939 1.9 1qdb:B, 1qdb:C
8 5dpl:A 520 110 0.0833 0.0423 0.2000 2.6 5doo:A, 5dpl:B
9 1kb0:A 670 62 0.0606 0.0239 0.2581 3.2
10 1aom:B 559 95 0.0871 0.0411 0.2421 4.5 1aof:A, 1aof:B, 1aom:A, 1aoq:A, 1aoq:B, 1dy7:A, 1dy7:B, 1e2r:A, 1e2r:B, 1gq1:A, 1gq1:B, 1h9x:A, 1h9x:B, 1h9y:A, 1h9y:B, 1hcm:A, 1hcm:B, 1hj3:A, 1hj3:B, 1hj4:A, 1hj4:B, 1hj5:A, 1hj5:B, 1qks:A, 1qks:B
11 9bh5:CL 204 45 0.0644 0.0833 0.3778 5.7 9cai:CL
12 2bex:B 457 26 0.0417 0.0241 0.4231 7.4
13 7y5f:B 341 50 0.0606 0.0469 0.3200 8.4 7vgn:A, 7y5f:A, 7y5i:A, 7y5i:B, 7y5p:A, 7y5p:B, 7yhe:A, 7yhe:B, 7yw9:A
14 8jxc:A 1337 50 0.0720 0.0142 0.3800 9.1 2i1p:A, 8jxb:B, 8jxh:B, 8jxi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218