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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPTIAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPV

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4v1f:A 86 47 0.5823 0.5349 0.9787 3.05e-27 8g07:1, 8g07:9, 8g0a:2, 8g0a:1, 8g0b:1, 8g0b:2, 8g0b:4, 8g0b:5, 8g0b:6, 8g0b:7, 8g0b:8, 8g0b:9, 8g0e:9, 8g0e:1, 8g0e:3, 8g0e:4, 8g0e:5, 8g0e:6, 8g0e:7, 8g0e:8, 8j0s:1, 8j0s:2, 8j0s:4, 8j0s:5, 8j0s:6, 8j0s:7, 8j0s:8, 8j0s:9, 8j57:1, 8j57:2, 8j57:4, 8j57:5, 8j57:6, 8j57:7, 8j57:8, 8j57:9, 7jg8:2, 7jg8:4, 7jg9:1, 7jg9:8, 7jga:1, 7jga:4, 7jga:6, 7jga:7, 7jga:8, 7jga:9, 7jgc:1, 7jgc:4, 7jgc:6, 7jgc:7, 7jgc:8, 7jgc:9, 8jr0:1, 8jr0:2, 8jr0:4, 8jr0:5, 8jr0:6, 8jr0:7, 8jr0:8, 8jr0:9, 8jr1:4, 8jr1:5, 8jr1:6, 8jr1:7, 8jr1:8, 8jr1:9, 8jr1:1, 8jr1:2, 7njv:M, 7njv:N, 4v1f:B, 4v1f:C, 4v1h:A, 4v1h:B, 4v1h:C
2 2wie:A 82 60 0.2658 0.2561 0.3500 1.37e-07 2wie:B, 2wie:C, 2wie:D, 2wie:E, 2xqs:D, 2xqt:A, 2xqt:B, 2xqt:C, 2xqt:D, 2xqt:E, 2xqu:A, 2xqu:B, 2xqu:C, 2xqu:D, 2xqu:E
3 3zk1:A 89 69 0.2911 0.2584 0.3333 9.81e-07 3zk1:B, 3zk1:D, 3zk1:G, 3zk1:H, 3zk1:J, 3zk1:N, 3zk1:O, 3zk1:P, 3zk1:R, 3zk1:S, 3zk1:U, 3zk2:A, 3zk2:C, 3zk2:E, 3zk2:H, 3zk2:I, 3zk2:K, 3zk2:M, 3zk2:N, 3zk2:O, 3zk2:P, 3zk2:L
4 5bps:B 75 57 0.2532 0.2667 0.3509 0.017 5bps:C, 5bps:A, 5bps:D, 5bps:E, 5bps:K, 5bps:L, 5bps:M, 5bps:N, 5bps:O, 5bq6:A, 5bq6:B, 5bq6:C, 5bq6:E, 5bq6:K, 5bq6:L, 5bq6:M, 5bq6:O, 5bqa:A, 5bqa:B, 5bqa:D, 5bqa:E, 5bqa:K, 5bqa:L, 5bqa:M, 5bqa:N, 5bqa:O, 5bqj:B, 5bqj:C, 5bqj:A, 5bqj:D, 5bqj:E, 5bqj:K, 5bqj:L, 5bqj:M, 5bqj:O, 6cp5:O, 6cp5:P, 4f4s:B, 4f4s:C, 4f4s:A, 4f4s:D, 4f4s:E, 4f4s:K, 4f4s:L, 4f4s:M, 4f4s:N, 4f4s:O, 3u32:L, 3u32:M, 3u32:O
5 5ft0:A 255 34 0.2152 0.0667 0.5000 0.068 5ft0:B, 5ft1:A, 5ft1:B, 5ft1:E, 5ft1:G, 5ft1:I, 5ft1:K
6 8khf:4 75 57 0.2532 0.2667 0.3509 0.21 8ki3:4, 8ki3:5, 6tt7:3, 6tt7:4
7 8aph:P1 78 54 0.2405 0.2436 0.3519 1.2 8apj:P1
8 6esq:I 347 27 0.1772 0.0403 0.5185 1.3
9 4pr3:A 205 22 0.1772 0.0683 0.6364 2.4 4pr3:B
10 2iv0:A 412 22 0.1772 0.0340 0.6364 3.6 2iv0:B
11 5xgx:A 381 52 0.1772 0.0367 0.2692 4.7 5xgw:A, 5xgw:B, 5xgx:B
12 8dqn:C 388 52 0.1899 0.0387 0.2885 6.0 8dqn:A, 8dqn:B, 8dqn:D, 8dqn:E, 8dqn:F, 8dqn:G, 8dqn:H
13 1tyo:A 427 43 0.2152 0.0398 0.3953 7.9 1xkd:A, 1xkd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218