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BioLiP
>protein
DPPLQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKY
ACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGNCTGIEFLDS

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kg0:A 157 157 1.0000 1.0000 1.0000 7.55e-117
2 7xpt:A 375 112 0.1720 0.0720 0.2411 1.1 8hl8:A, 8hl8:C, 7xpr:A, 7xpr:B, 7xps:A, 7xps:B, 7xpt:B, 7xpu:A, 7xpu:B, 7xpv:A, 7xpv:B, 7yua:A, 7yua:B, 7yua:C, 7yua:D
3 7arc:F 430 52 0.0955 0.0349 0.2885 3.5 7ard:F
4 3lrl:A 452 60 0.1019 0.0354 0.2667 3.8 3lrm:A, 3lrm:B, 3lrm:C, 3lrm:D
5 3ht5:A 335 54 0.1083 0.0507 0.3148 5.1 5u3f:A, 5u3f:B
6 4rpu:A 988 46 0.1083 0.0172 0.3696 5.4 4l3t:A, 4l3t:B, 4nge:A, 4nge:D, 4rpu:B
7 4au9:A 448 45 0.1083 0.0379 0.3778 9.1 5ag0:A, 5ag0:B, 5ag1:A, 5ag1:B, 4au9:B, 5ikd:A, 5ikg:A, 4uzi:A, 4uzi:B, 4w7j:A, 4w7j:B, 4w7j:C, 4w7j:D, 4w7k:A, 4w7k:B, 4w7l:A, 4w7l:B, 4w7m:A, 4w7m:B, 4w7n:A, 4w7n:B, 4w7o:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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