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BioLiP
>protein
DPMKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDVEVTGVLTALDCTLEVVNEAIEKGYNTIISHHPLIFKGVTSLKAN
GYGLIIRKLIQHDINLIAMHTNLDVNPYGVNMMLAKVMGLKNISIINNQQDVYYKVQEFMIDAYQKSRAEQLIKQTPVFD
FIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGSGIGYEYQAVQQGADVFVTGDI
KHHDALDAKIHGVNLIDINHYSEYVMKEGLKTLLMNWFNIEKINIDVEASTINTDPFQYI

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lnl:A 307 307 0.9967 0.9739 0.9739 0.0 2nyd:A
2 3lnl:B 349 347 0.9967 0.8567 0.8617 0.0 2nyd:B
3 2gx8:C 364 130 0.1700 0.1401 0.3923 4.35e-26 2gx8:A, 2gx8:B
4 2gx8:C 364 121 0.1767 0.1456 0.4380 2.35e-22 2gx8:A, 2gx8:B
5 3wse:A 248 293 0.2433 0.2944 0.2491 3.98e-17 3wsd:A, 3wsd:B, 3wsd:C, 3wsd:D, 3wsd:E, 3wsd:F, 3wse:B, 3wse:C, 3wse:D, 3wse:E, 3wse:F, 3wsf:A, 3wsf:B, 3wsf:C, 3wsf:D, 3wsf:E, 3wsf:F, 3wsg:A, 3wsg:B, 3wsg:C, 3wsg:D, 3wsg:E, 3wsg:F, 3wsh:A, 3wsh:B, 3wsh:C, 3wsh:D, 3wsh:E, 3wsh:F, 3wsh:G, 3wsh:H, 3wsh:I, 3wsh:J, 3wsh:K, 3wsh:L, 3wsi:A, 3wsi:B, 3wsi:C, 3wsi:D, 3wsi:E, 3wsi:F
6 1nmo:A 247 255 0.1800 0.2186 0.2118 4.39e-08 1nmo:B, 1nmo:C, 1nmo:D, 1nmo:E, 1nmo:F, 1nmp:A, 1nmp:B, 1nmp:C, 1nmp:D, 1nmp:E, 1nmp:F
7 3oha:A 516 151 0.1300 0.0756 0.2583 0.084 3mfh:A, 3mfi:A, 3ohb:A, 2r8j:A, 2r8j:B, 2r8k:A, 2r8k:B, 5vtp:A, 2wtf:A, 2wtf:B, 2xgp:A, 2xgp:B, 2xgq:A, 2xgq:B
8 4kbf:A 365 87 0.0867 0.0712 0.2989 1.2 2gxq:A, 2gxs:A, 2gxs:B, 2gxu:A, 3mwk:B, 3mwl:B, 3nbf:A, 3nbf:B, 3nbf:C, 3nbf:D
9 8hw2:A 1375 68 0.0567 0.0124 0.2500 5.1 8hw4:A
10 4if2:A 324 64 0.0733 0.0679 0.3438 6.6
11 6uzy:A 278 56 0.0667 0.0719 0.3571 7.6 6uzy:B, 6uzy:C, 6uzy:D, 6uzy:E, 6uzy:F, 6uzy:G
12 4ozn:A 116 52 0.0467 0.1207 0.2692 7.7 4ozj:A, 4ozn:C
13 1ho5:A 525 165 0.1333 0.0762 0.2424 9.8 1ho5:B, 1hp1:A, 1hpu:A, 1hpu:B, 1hpu:C, 1hpu:D, 1oi8:A, 1oi8:B, 1ush:A, 2ush:A, 2ush:B, 4wwl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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