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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DPMALIDQLKEEQKLAMKAKDKLRLGTIRLALAAIKQREVDEQITLNDDDILAVLTKMVKQRRDSVTQYEAAGRQDLADV
EQAEITVLEEFMPQPLTEEEVAALIEKAIAESGAAGMQDMGKVMGVLKPQIQGRADMGKVSGLVRAKL

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8xjg:A 148 148 1.0000 1.0000 1.0000 1.31e-101
2 4fhc:A 340 40 0.0811 0.0353 0.3000 0.30 4fhd:A, 4fhe:A, 4fhf:A, 4fhg:A, 4k9r:A, 4rh0:A, 4rh1:A
3 2isj:A 219 38 0.0946 0.0639 0.3684 1.1 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
4 1j56:A 124 57 0.1081 0.1290 0.2807 2.3 1krx:A
5 1v26:B 510 35 0.0946 0.0275 0.4000 5.2 1v25:A, 1v25:B, 1v26:A
6 8tct:A 275 48 0.1081 0.0582 0.3333 6.1
7 2uzh:C 155 34 0.1081 0.1032 0.4706 7.9 2uzh:A, 2uzh:B
8 5x2n:C 433 107 0.1689 0.0577 0.2336 9.5 5x2m:A, 5x2m:C, 5x2n:A, 5x2o:A, 5x2o:C, 5x2p:A, 5x2p:C, 5x2q:A, 5x2q:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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