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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DPLLRTGSVFGGLVRDVRRRYPHYPSDLRDALHSQCVAAVLFIYFAALSPAITFGGLLGEKTEGLMGVSELIVSTAVLGV
LFSLLGAQPLLVVGFSGPLLVFEEAFFKFCRAQDLEYLTGRVWVGLWLVVFVLALVAAEGSFLVRYISPFTQEIFAFLIS
LIFIYETFYKLYKVFTEHPLLPFYPPEPSPRNQPNTALLSLILMLGTFFIAFFLRKFRNSRFLGGKARRIIGDFGIPISI
LVMVLVDYSITDTYTQKLTVPTGLSVTSPDKRSWFIPPLGSARPFPPWMMVAAAVPALLVLILIFMETQITALIVSQKAR
RLLKGSGFHLDLLLIGSLGGLCGLFGLPWLTAATVRSVTHVNALTVMRTAIAPGDKPQIQEVREQRVTGVLIASLVGLSI
VMGAVLRRIPLAVLFGIFLYMGVTSLSGIQLSQRLLLILMPAKHHPEQPYVTKVKTWRMHLFTCIQLGCIALLWVVKSTA
ASLAFPFLLLLTVPLRHCLLPRLFQDRELQALDS

The query sequence (length=514) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8y85:A 514 514 1.0000 1.0000 1.0000 0.0 8y85:B, 8y86:A
2 8gvh:A 788 514 0.7393 0.4822 0.7393 0.0 8gv8:A, 8gv8:B, 8gvh:B, 8jni:B, 8jni:A, 8zle:A, 8zle:B
3 7tvz:A 850 519 0.6770 0.4094 0.6705 0.0 8crq:C, 8crq:E, 8crr:C, 8crr:E, 8crt:C, 8crt:E, 8ct3:C, 8ct3:E, 8t3r:B, 8t44:B, 8t47:B, 8t47:A, 8t6u:A, 8t6u:B, 8t6v:A, 8t6v:B, 7tvz:B, 7ty4:A, 7ty4:B, 7ty6:A, 7ty6:B, 7ty7:A, 7ty7:B, 7ty8:A, 7ty8:B, 7tya:A, 7tya:B, 7uz3:C, 7uz3:E, 7v07:C, 7v07:E, 7v19:C, 7v19:E
4 8cs9:g 832 518 0.6751 0.4171 0.6699 0.0 8cs9:V, 8cs9:e, 8cs9:Y, 8cs9:f, 8cs9:Z, 8cte:P, 8cte:T, 7v0k:O, 7v0k:P
5 4yzf:A 475 502 0.6518 0.7053 0.6673 0.0 4yzf:B, 4yzf:C, 4yzf:D
6 8t45:A 460 485 0.6070 0.6783 0.6433 0.0 8t3r:A, 8t3u:A, 8t3u:B, 8t44:A, 8t45:B
7 7rtm:A 571 563 0.4611 0.4151 0.4210 2.63e-141 7rtm:B
8 7x1i:A 678 518 0.2938 0.2227 0.2915 1.03e-57 7x1i:B, 7x1j:B, 7x1j:A
9 8teg:A 539 533 0.3035 0.2894 0.2927 4.39e-54
10 2iwa:A 254 36 0.0214 0.0433 0.3056 0.89 2faw:A, 2faw:B
11 4cyj:B 412 33 0.0292 0.0364 0.4545 1.3 4cyi:A, 4cyi:B, 4cyi:C, 4cyi:D, 4cyi:E, 4cyi:F, 4cyi:G, 4cyi:H, 4cyj:A, 4cyj:C, 4cyj:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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