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BioLiP
>protein
DPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHP
EAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEA
I

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2arc:B 164 161 1.0000 0.9817 1.0000 9.39e-119 2aac:A, 2aac:B, 2arc:A
2 7zvm:A 104 38 0.0932 0.1442 0.3947 0.074
3 7cbs:F 104 27 0.0683 0.1058 0.4074 0.18
4 7cbs:A 132 27 0.0683 0.0833 0.4074 0.20 7cbs:C, 7cbs:L
5 4bu2:A 379 19 0.0683 0.0290 0.5789 1.3
6 4bxf:A 425 19 0.0683 0.0259 0.5789 1.3 4bxf:B
7 3i5o:A 582 38 0.0932 0.0258 0.3947 1.5 3i5o:B, 4jsd:A, 4jso:A, 2o7i:A
8 8etf:C 330 41 0.0807 0.0394 0.3171 1.6 8esg:A, 8esg:H, 8etf:H, 8etf:A, 8etf:B, 8etf:D, 8etf:E, 8etf:F, 8etf:G, 8fao:H, 8fao:A, 8fao:B, 8fao:C, 8fao:D, 8fao:E, 8fao:F, 8fao:G
9 3ejb:H 387 57 0.1180 0.0491 0.3333 2.7 3ejb:B, 3ejb:D, 3ejb:F, 3ejd:B, 3ejd:D, 3ejd:F, 3ejd:H, 3eje:B, 3eje:D, 3eje:F, 3eje:H
10 4bif:A 131 80 0.1491 0.1832 0.3000 3.2 4bif:B, 4bif:C, 4bif:D, 4bif:E, 4bif:F, 4bif:G, 4bif:H, 8oz8:A, 8oz8:B, 8oz8:C, 8oz8:D, 4uxa:A, 4uxa:B, 4uxa:C, 4uxa:D, 4uxa:E, 4uxa:F, 4uxa:G, 4uxa:H, 4uxa:I, 4uxa:J, 4uxa:K, 4uxa:L, 4uxa:M, 4uxa:N, 4uxa:O, 4uxa:P, 4uxa:Q, 4uxa:R, 4uxa:S, 4uxa:T
11 5vpn:E 585 65 0.1366 0.0376 0.3385 4.4 6awf:A, 2b76:A, 2b76:M, 1kf6:A, 1kf6:M, 1kfy:A, 1kfy:M, 4kx6:A, 4kx6:M, 1l0v:A, 1l0v:M, 3p4p:A, 3p4p:M, 3p4q:A, 3p4q:M, 3p4r:A, 3p4r:M, 3p4s:A, 3p4s:M, 5vpn:A
12 6tgv:C 389 72 0.1429 0.0591 0.3194 6.7 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
13 6odf:B 419 60 0.1180 0.0453 0.3167 8.6 6odf:F, 6odf:H, 6odf:D
14 8re3:A 445 39 0.0932 0.0337 0.3846 9.4 8re2:A, 8re3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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