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BioLiP
>protein
DPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHG
TEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREY
VCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYALKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANGEPAHT
GCVAFGMDRLAVAMFHTHGTDLSAWPAKVRDILGL

The query sequence (length=275) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3pzc:B 276 275 1.0000 0.9964 1.0000 0.0 3mey:B, 3mf1:B
2 3mf2:A 299 295 1.0000 0.9197 0.9322 0.0 4h2s:A, 4h2s:B, 4h2t:A, 4h2t:B, 4h2u:A, 4h2u:B, 4h2v:A, 4h2v:B, 4h2w:A, 4h2w:B, 4h2x:A, 4h2x:B, 4h2y:A, 4h2y:B, 3mey:A, 3mf1:A, 3mf2:B, 3pzc:A
3 3w3s:A 527 289 0.2545 0.1328 0.2422 9.39e-14
4 6r1n:A 420 69 0.0873 0.0571 0.3478 0.094
5 2cjb:B 495 272 0.1964 0.1091 0.1985 0.17 2cim:A, 2cim:B, 2cj9:A, 2cj9:B, 2cja:A, 2cja:B, 2cjb:A
6 6ote:A 409 68 0.0582 0.0391 0.2353 0.25
7 6int:A 413 80 0.0909 0.0605 0.3125 0.51 6int:B, 6int:C, 6int:D, 6int:E, 6int:F, 6int:G, 6int:H
8 1wnb:A 474 67 0.0618 0.0359 0.2537 0.82 1wnb:B, 1wnb:C, 1wnb:D, 1wnd:A, 1wnd:B, 1wnd:C, 1wnd:D
9 2dq0:A 447 121 0.0982 0.0604 0.2231 1.0 2dq0:B, 2zr2:A, 2zr2:B
10 2gu2:A 307 100 0.1018 0.0912 0.2800 1.0 2gu2:B, 2q4z:B
11 1i7e:A 237 61 0.0727 0.0844 0.3279 1.5
12 2gsy:E 433 54 0.0582 0.0370 0.2963 5.5 2df7:A, 2df7:F, 2df7:B, 2df7:C, 2df7:E, 2df7:L, 2df7:G, 2df7:K, 2df7:M, 2df7:H, 2df7:N, 2df7:O, 2df7:I, 2df7:J, 2df7:Q, 2df7:P, 2df7:R, 2df7:S, 2df7:T, 2gsy:A, 2gsy:B, 2gsy:C, 2gsy:J, 2gsy:D, 2gsy:F, 2gsy:I, 2gsy:K, 2gsy:G, 2gsy:H, 2gsy:N, 2gsy:L, 2gsy:M, 2gsy:R, 2gsy:O, 2gsy:P, 2gsy:Q, 2gsy:S, 2gsy:T
13 6chs:A 460 115 0.0982 0.0587 0.2348 5.7 6cdd:A, 6cdd:B
14 2w9m:B 559 47 0.0655 0.0322 0.3830 6.7 2w9m:A
15 2alp:A 198 25 0.0436 0.0606 0.4800 8.3 1gbb:A, 1gbc:A, 1gbd:A, 1gbf:A, 1gbh:A, 1gbi:A, 1gbk:A, 1gbl:A, 1gbm:A, 2h5d:A, 2lpr:A, 3lpr:A, 5lpr:A, 6lpr:A, 7lpr:A, 8lpr:A, 9lpr:A, 3m7t:A, 3m7u:A, 1p01:A, 1p02:A, 1p03:A, 1p04:A, 1p05:A, 1p06:A, 1p10:A, 1p11:E, 1p12:E, 3pro:A, 3pro:B, 3qgj:A, 3qgj:C, 1ssx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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