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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPKKDQEAKERLKRKIRKLEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERDTI
RAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVYTQVE

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a5f:A 162 147 0.9932 0.9012 0.9932 6.64e-101 7a5g:A, 7a5h:8, 7a5i:83, 7a5j:8, 7a5k:A, 8any:8, 6i9r:8, 3j7y:8, 3j9m:8, 8k2a:Ln, 8k2b:Ln, 7l08:8, 7l20:8, 6nu2:8, 6nu3:8, 7o9k:8, 7o9m:8, 7odr:8, 7ods:8, 7odt:8, 7of0:8, 7of2:8, 7of3:8, 7of4:8, 7of5:8, 7of6:8, 7of7:8, 7og4:8, 7oi7:8, 7oi8:8, 7oi9:8, 7oia:8, 7oib:8, 7oic:8, 7oid:8, 7oie:8, 8oir:Bp, 8oit:Bp, 5ool:8, 5oom:8, 7pd3:8, 8pk0:8, 7po4:8, 7qi4:8, 7qi5:8, 7qi6:8, 8qsj:8, 8qu5:8, 6vlz:8, 6vmi:8, 8xt0:Ln, 8xt1:Ln, 8xt2:Ln, 8xt3:Ln, 6zm5:8, 6zm6:8, 6zs9:8, 6zsa:8, 6zsb:8, 6zsc:8, 6zsd:8, 6zse:8, 6zsg:8
2 8oin:Bp 143 143 0.7415 0.7622 0.7622 1.69e-77 5aj4:Bd, 6gaw:Bd, 6gb2:Bd, 7nqh:Bd, 7nql:Bd, 7nsh:Bd, 7nsi:Bd, 7nsj:Bd, 8oiq:Bp, 6ydp:Bd, 6ydw:Bd
3 3j6b:2 113 95 0.1701 0.2212 0.2632 0.082 5mrc:2, 5mre:2, 5mrf:2
4 1eu4:A 204 70 0.1088 0.0784 0.2286 0.10
5 4aos:A 523 79 0.1633 0.0459 0.3038 0.43 4aox:A, 4ap1:A, 4ap3:A
6 4obi:A 87 26 0.0748 0.1264 0.4231 2.0
7 7ed6:A 203 77 0.1701 0.1232 0.3247 6.9 7ed6:B, 7ed9:A, 7ed9:B
8 4xzp:A 148 26 0.0816 0.0811 0.4615 8.1 5duu:A, 5duu:B, 5duu:C, 5duu:D, 5duv:A, 5duv:B, 5duv:C, 5duv:D, 5duw:A, 5duw:B, 5duw:C, 5duw:D, 5dux:B, 5dux:D, 5dux:A, 5dux:C
9 6xyw:AF 84 84 0.1769 0.3095 0.3095 9.1
10 7vw6:B 560 114 0.2109 0.0554 0.2719 9.4 7e5z:B, 8j83:B, 7xqw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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