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BioLiP
>protein
DPITSTEEIPFDKKREFDPNMAPGTEKVVQKGEPGTKTITTPTTGEGEPTEKITKQPVDEIVHYGGEQIPQGHKDEFDPN
APVDSKTEVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKREFDPNMAPGTEKVVQKGEPGTKTITT
PTTKNPMTGEKVGEGKSTEKVTKQPVDEIVEYGPT

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fun:A 206 203 0.9744 0.9223 0.9360 2.11e-126 4fum:A, 4fuo:A, 4fup:A, 4fup:B
2 4fun:A 206 77 0.3641 0.3447 0.9221 4.85e-41 4fum:A, 4fuo:A, 4fup:A, 4fup:B
3 8deo:A 454 202 0.8410 0.3612 0.8119 5.24e-98 8deo:B, 8g1l:A, 7sie:A
4 8deo:A 454 77 0.3179 0.1366 0.8052 2.50e-32 8deo:B, 8g1l:A, 7sie:A
5 3tiq:B 214 197 0.6051 0.5514 0.5990 3.63e-77 3tiq:A
6 3tiq:B 214 76 0.2103 0.1916 0.5395 5.31e-15 3tiq:A
7 3a1n:A 315 70 0.0974 0.0603 0.2714 0.38 3a1n:B, 3a4v:A, 3a4v:B, 3a9w:A, 3a9w:B, 3ajr:A, 3ajr:B
8 4xev:A 148 65 0.0872 0.1149 0.2615 2.1 3gm1:A, 3gm1:B, 4r32:A, 3u3f:A, 3u3f:B, 3u3f:C, 3u3f:D, 4xef:A, 4xef:D, 4xek:A, 4xev:D
9 4r43:A 601 21 0.0513 0.0166 0.4762 7.6 5i67:A, 4rcg:A, 4wie:A, 4wiu:A, 4wl8:A, 4wou:A, 4wpt:A, 4wpu:A, 4wpv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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