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BioLiP
>protein
DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3iyd:A 322 72 1.0000 0.2236 1.0000 1.89e-45 6b6h:I, 7beg:B, 7c17:A, 7c97:K, 7chw:K, 5ciz:B, 7dy6:K, 8ftd:R, 8igr:G, 7khc:A, 7khc:B, 1lb2:B, 1lb2:E, 7mkd:R, 7mkj:R, 3n4m:B, 3n4m:C, 6n4c:A, 6n4c:B, 3n97:B, 3n97:C, 6oul:R, 6psq:M, 6psr:M, 6pss:M, 6pst:M, 6psu:M, 6psv:M, 6psw:M, 8tom:M, 8u3b:A, 7w5x:A, 7w5y:A, 8y6u:I
2 7ye1:A 307 72 0.6528 0.1531 0.6528 6.53e-28 7ye2:A
3 8hih:G 57 49 0.4028 0.5088 0.5918 1.95e-16 6ccv:T, 5tw1:T, 5vi8:T, 6vvs:T, 6vvv:T
4 8dy9:B 319 59 0.4583 0.1034 0.5593 7.67e-16
5 8skr:A 402 36 0.2083 0.0373 0.4167 4.1 3pd6:A, 3pd6:B, 3pd6:C, 3pdb:B, 3pdb:D, 8skr:C
6 5e76:A 492 27 0.1250 0.0183 0.3333 4.1
7 7nhk:i 131 40 0.1528 0.0840 0.2750 6.3 6o8w:h, 6o8x:h, 6o8y:h, 6o8z:h, 6o90:h, 7p7q:i, 7p7r:i, 7p7s:i, 7p7t:i, 7p7u:i, 6w6p:h, 6wub:h
8 3da3:A 270 64 0.2083 0.0556 0.2344 6.5 3da3:B, 2xmx:A, 2xmx:B
9 2q04:A 211 21 0.1250 0.0427 0.4286 6.7 2q04:B, 2q04:C, 2q04:F
10 5xon:W 329 35 0.1944 0.0426 0.4000 8.4
11 8t2v:B 718 64 0.2361 0.0237 0.2656 10.0 4cak:B, 3fcs:B, 3fcs:D, 3fcu:B, 3fcu:D, 3fcu:F, 4g1e:B, 4g1m:B, 8gcd:B, 8gce:B, 5hdb:B, 5hdb:D, 3ije:B, 7l8p:B, 7l8p:D, 7la4:B, 6mk0:B, 4mmx:B, 4mmy:B, 4mmz:B, 6msl:B, 6msu:B, 6naj:B, 3nid:B, 3nid:D, 3nif:B, 3nif:D, 3nig:B, 3nig:D, 4o02:B, 8t2u:B, 3t3m:B, 3t3m:D, 3t3p:B, 3t3p:D, 7tct:B, 7tct:D, 7td8:B, 7td8:D, 7tho:B, 7tho:D, 7tmz:B, 7tmz:D, 7tpd:B, 7tpd:D, 1tye:B, 1tye:D, 1tye:F, 7u60:B, 7u60:D, 7u9f:B, 7u9f:D, 7u9v:B, 7u9v:D, 7ubr:B, 7ubr:D, 7ucy:B, 7ucy:D, 7udg:B, 7udg:D, 7udh:B, 7udh:D, 7ue0:B, 7ue0:D, 7ufh:B, 7ufh:D, 7uh8:B, 7uh8:D, 7uje:B, 7uje:D, 7ujk:B, 7ujk:D, 7uk9:B, 7uk9:D, 7uko:B, 7uko:D, 7ukp:B, 7ukp:D, 7ukt:B, 7ukt:D, 6v4p:B, 2vc2:B, 2vdk:B, 2vdl:B, 2vdm:B, 2vdn:B, 2vdo:B, 2vdp:B, 2vdq:B, 2vdr:B, 4z7n:B, 4z7n:D, 4z7o:B, 4z7o:D, 4z7q:B, 4z7q:D, 3zdx:B, 3zdx:D, 3zdy:B, 3zdy:D, 3zdz:B, 3zdz:D, 3ze0:B, 3ze0:D, 3ze1:B, 3ze1:D, 3ze2:B, 3ze2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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