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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRG
PPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKTVHINENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEE
KLREMAQKARERVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWR

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aav:v 206 206 1.0000 1.0000 1.0000 1.31e-153 7abi:v
2 6ff4:C 286 240 1.0000 0.7203 0.8583 6.71e-145 6ff7:C
3 8i0u:R 380 291 0.9757 0.5289 0.6907 3.67e-128 8c6j:K, 8i0s:R, 8i0t:R, 8i0v:R, 8i0w:R, 6icz:R, 6id0:R, 6id1:R, 5mqf:C, 6qdv:K, 7w59:R, 7w5a:R, 7w5b:R, 5xjc:R, 5yzg:R, 6zym:C
4 9fmd:R 328 206 0.8350 0.5244 0.8350 1.06e-113 8ro2:R
5 8ch6:Y 306 267 0.9466 0.6373 0.7303 1.13e-106 7qtt:Y
6 7dvq:R 241 231 0.8252 0.7054 0.7359 3.01e-101
7 8ro0:R 282 161 0.5146 0.3759 0.6584 7.75e-56 8ro1:R
8 3jb9:M 207 173 0.3932 0.3913 0.4682 4.38e-31
9 7dco:P 246 212 0.3204 0.2683 0.3113 8.99e-20 6exn:K, 5gm6:P, 5gmk:P, 6j6g:P, 6j6h:P, 6j6n:P, 6j6q:P, 5lj3:K, 5lj5:K, 5lqw:M, 5wsg:P, 5y88:Q, 5ylz:Q
10 6bk8:E 186 160 0.2524 0.2796 0.3250 6.29e-10
11 5mps:K 187 165 0.2379 0.2620 0.2970 2.12e-09 7b9v:K, 5mq0:K
12 2xrc:C 454 87 0.1214 0.0551 0.2874 0.12
13 7t3u:C 1575 41 0.0631 0.0083 0.3171 0.47
14 7t3p:A 2066 41 0.0631 0.0063 0.3171 0.48 7t3p:B, 7t3p:C, 7t3p:D
15 7t3u:A 2020 41 0.0631 0.0064 0.3171 0.49 7t3u:D
16 7t3q:A 2103 41 0.0631 0.0062 0.3171 0.50 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
17 4xrf:A 142 57 0.0825 0.1197 0.2982 1.7
18 5zm8:A 386 85 0.1117 0.0596 0.2706 4.1
19 1t6b:X 676 76 0.0922 0.0281 0.2500 4.2 1acc:A, 3hvd:A, 3hvd:C, 3hvd:D, 3hvd:E, 3hvd:F, 3hvd:G, 3hvd:H, 3q8b:A, 3q8c:A
20 5zm8:B 413 85 0.1117 0.0557 0.2706 5.0
21 6wku:A 677 35 0.0534 0.0162 0.3143 5.5
22 6mpx:A 673 35 0.0631 0.0193 0.3714 5.6 1t61:C, 1t61:F
23 6mpx:A 673 35 0.0631 0.0193 0.3714 5.6 1t61:C, 1t61:F
24 8hnt:C 88 60 0.0874 0.2045 0.3000 5.8 8hnv:E, 8ja0:D
25 2i33:A 238 156 0.1748 0.1513 0.2308 6.0 2i33:B, 2i34:A, 2i34:B
26 6uqk:A 2054 37 0.0534 0.0054 0.2973 7.6 6uqk:B, 6uqk:C, 6uqk:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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