Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DPAPVARALREELARTLYCEPGDIDDEASFNTLGLDSILGVEFVAFVNQTYGLDEKAGILYDHPSLAALSRHVAGRAA

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ahq:C 78 78 1.0000 1.0000 1.0000 7.87e-53 8ahq:D
2 2liw:A 99 72 0.4103 0.3232 0.4444 4.74e-18
3 5hv8:A 95 59 0.2308 0.1895 0.3051 3.37e-06
4 7en2:B 1410 47 0.2308 0.0128 0.3830 4.15e-05 7emy:A, 7emy:B, 7en1:A, 7en1:B, 7en2:A
5 5zk4:D 73 54 0.2308 0.2466 0.3333 2.03e-04
6 8qzi:E 86 76 0.2692 0.2442 0.2763 0.003 7bdw:B, 6rcx:B
7 6d8i:A 79 65 0.1923 0.1899 0.2308 0.19
8 4af0:A 395 54 0.2308 0.0456 0.3333 0.46 4af0:B
9 8g3i:B 515 49 0.2051 0.0311 0.3265 0.98
10 8jqe:A 296 56 0.1923 0.0507 0.2679 1.9 8jqe:B
11 6sga:FJ 353 42 0.1923 0.0425 0.3571 2.2 6sg9:FJ, 6sgb:FJ
12 8w2d:A 322 44 0.1923 0.0466 0.3409 2.3 8w2d:B
13 7zmb:Q 85 36 0.1667 0.1529 0.3611 2.3 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
14 8bee:U 87 37 0.1667 0.1494 0.3514 2.6 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
15 5hkc:A 114 42 0.1667 0.1140 0.3095 2.8 5hk0:B, 5hk0:D, 5hk3:B
16 7ar7:T 84 36 0.1667 0.1548 0.3611 3.5 7ar8:T, 8bq6:T
17 3kpx:A 189 22 0.1667 0.0688 0.5909 4.4
18 8e73:AB 85 36 0.1667 0.1529 0.3611 4.6
19 5msr:B 520 57 0.1667 0.0250 0.2281 9.1 5msp:A, 5msr:A, 5msr:C, 5msr:D, 5msv:A, 5msv:B, 5msv:C, 5msv:D
20 8ba0:U 85 45 0.1923 0.1765 0.3333 9.3 8ba0:T, 8esz:AC

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218