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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP
ILNSLNEDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI
ITPSERMRRLSR

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yxb:B 172 172 1.0000 1.0000 1.0000 5.08e-122 4yxb:A
2 6seh:C 252 86 0.1395 0.0952 0.2791 0.33 6seh:A
3 6eg0:B 309 90 0.1395 0.0777 0.2667 1.5 6nrw:B
4 8fvz:A 433 119 0.1512 0.0600 0.2185 2.3 8fvz:B, 7sp5:A, 7sp5:B
5 6zck:A 271 39 0.0640 0.0406 0.2821 4.3
6 8w7g:A 390 59 0.1105 0.0487 0.3220 4.6
7 2z36:B 404 62 0.1337 0.0569 0.3710 5.4 2z36:A
8 8qhp:A 410 49 0.0872 0.0366 0.3061 6.0 8qhp:B
9 5vbu:A 442 68 0.1279 0.0498 0.3235 7.0 5vbu:B, 5vbu:C, 4y8w:A, 4y8w:B, 4y8w:C
10 8a1h:A 516 39 0.0640 0.0213 0.2821 7.8 7ykn:A
11 7o85:A 332 46 0.0814 0.0422 0.3043 8.2 7o85:D, 7o85:G, 7o85:J, 7o85:M, 7o85:P, 7o85:S
12 7kxr:A 562 46 0.0814 0.0249 0.3043 8.2 3j9c:A, 7kxr:B, 7kxr:C, 7kxr:D, 7kxr:E, 7kxr:F, 7kxr:G, 6psn:A, 6psn:B, 6psn:C, 6psn:D, 6psn:E, 6psn:F, 6psn:G, 6uzb:A, 6uzb:B, 6uzb:C, 6uzb:D, 6uzb:E, 6uzb:F, 6uzb:G, 6uzd:A, 6uzd:B, 6uzd:C, 6uzd:D, 6uzd:E, 6uzd:F, 6uzd:G, 6uze:A, 6uze:B, 6uze:C, 6uze:D, 6uze:E, 6uze:F, 6uze:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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