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BioLiP
>protein
DNMKVSVYGAGNQNLYINKLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNKNIMSDDLWKKVEDAGVKVVSDDVEA
AKHGEIHVLFTPFGKATFRIAKTIIEHVPENAVICNTCTVSPVVLYYSLEPILRTKRKDVGISSMHPAAVPGTPQHGHYV
IGGKTTDGKELATEEQIKKAVELAKSAGKEAYVVPADVSSVVADMGSLVTAVALSGVLDYYTVGRKIINAPKKMIEQQVI
MTLQTMASLVETSGIEGMVKALNPELLIRSASSMKLLDRQKDLDAALEILQNLDETLKAEVEKAEIKPTTLVAAQSLVKE
IKTLIGGAAAEGAIKRSARKLFEH

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hux:A 369 344 1.0000 0.9322 1.0000 0.0 4yt4:A, 4yt5:A, 4yt5:B
2 6huy:B 357 350 0.4797 0.4622 0.4714 6.10e-107 6huy:A, 6huy:C, 6huy:D, 6huz:A
3 3f46:A 345 225 0.2035 0.2029 0.3111 3.87e-23 3daf:A, 3dag:A, 3f47:A, 3h65:A
4 6ggu:A 344 228 0.1831 0.1831 0.2763 7.16e-22 4jjf:A, 4jjf:B, 4jjg:A, 4jjg:B, 5ok4:A
5 6hac:A 342 225 0.1948 0.1959 0.2978 1.06e-21 6hae:A, 6hae:K, 6hav:A
6 6yk9:A 341 210 0.1715 0.1730 0.2810 1.90e-19 6yk9:B, 6yk9:C, 6yk9:E, 6yka:B, 6ykb:A, 6ykb:C
7 1o5i:B 234 51 0.0494 0.0726 0.3333 1.1
8 4dyk:A 437 73 0.0669 0.0526 0.3151 1.1 4dyk:B, 4gbd:A, 4gbd:B
9 6inw:B 390 77 0.0698 0.0615 0.3117 1.5 6inw:A, 6iv7:A, 6iv7:B, 6ix3:A, 6ix3:B, 6ix5:A, 6ix5:B, 6ix7:A, 6ix7:B, 6ix8:A, 6ix8:B, 6ix9:A, 6ix9:B, 6j1o:A, 6j1o:B, 6j24:B, 6j24:A, 6j46:A, 6j46:B, 5zzd:A, 5zzd:B
10 1b0p:A 1231 53 0.0465 0.0130 0.3019 1.7 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
11 2k2f:A 93 42 0.0523 0.1935 0.4286 1.8 2k2f:B, 5k89:A, 5k89:C, 5k89:H, 2kbm:A, 2kbm:B, 2lp2:A, 2lp2:B, 2lp3:A, 2lp3:B, 2lux:A, 2lux:B, 8vk4:I, 8vk4:J, 8vk4:K, 8vk4:L, 8vk4:N, 8vk4:M, 8vk4:O, 8vk4:P, 1zfs:A, 1zfs:B
12 6z81:A 342 61 0.0552 0.0556 0.3115 4.0 4wq4:A, 4wq4:B, 4wq5:A, 4wq5:B, 4ydu:A, 4ydu:B, 6z81:B, 3zet:B, 3zeu:B, 3zeu:E
13 1okg:A 362 102 0.0814 0.0773 0.2745 4.0
14 5hvq:C 236 55 0.0523 0.0763 0.3273 7.7 5wy5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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