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BioLiP
>protein
DNITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKD
KIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1qsm:D 152 150 1.0000 0.9868 1.0000 3.18e-111 1qsm:A, 1qsm:B, 1qsm:C
2 7zkt:B 202 82 0.1800 0.1337 0.3293 4.57e-06 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
3 7ovv:B 196 75 0.1600 0.1224 0.3200 9.93e-05 7ovv:A
4 6bvc:A 154 79 0.1533 0.1494 0.2911 5.52e-04 1bo4:A, 1bo4:B
5 2bei:A 156 137 0.2133 0.2051 0.2336 0.021 2q4v:A
6 6wqc:A 293 68 0.1133 0.0580 0.2500 0.083 6wqb:A
7 4mbu:A 165 60 0.1200 0.1091 0.3000 0.16 4mbu:B
8 2ge3:A 164 45 0.1000 0.0915 0.3333 0.19 2ge3:B, 2ge3:C
9 3ond:B 488 62 0.0933 0.0287 0.2258 0.51 3ond:A, 3one:A, 3one:B, 3onf:A, 3onf:B
10 1yvk:A 152 62 0.1200 0.1184 0.2903 0.53 1yvk:B, 1yvk:C, 1yvk:D
11 3pp9:A 176 56 0.1200 0.1023 0.3214 0.57 3pp9:B, 3pp9:C
12 5f47:B 152 101 0.1733 0.1711 0.2574 0.87 5f47:A, 5f48:A, 5f48:B, 5f49:A, 5f49:B, 5f49:C, 5f49:D, 5u08:A, 5u08:B, 5u08:C, 5u08:D
13 2fdr:A 222 46 0.1133 0.0766 0.3696 0.95
14 1b87:A 181 112 0.1533 0.1271 0.2054 2.1 2a4n:A, 2a4n:B, 1n71:A, 1n71:B, 1n71:C, 1n71:D
15 2q0y:A 153 57 0.1067 0.1046 0.2807 2.7
16 3f8k:A 131 54 0.1133 0.1298 0.3148 3.1
17 3d8p:A 158 100 0.1467 0.1392 0.2200 3.4
18 2j8m:A 171 55 0.0867 0.0760 0.2364 6.3 2bl1:A, 2j8m:B, 2j8r:A, 2j8r:B
19 3gbe:A 558 63 0.1067 0.0287 0.2540 7.2
20 5y2v:A 304 43 0.0933 0.0461 0.3256 7.8 5y2v:B, 5y2v:C, 5y2v:D, 5y2w:A
21 1wwz:A 157 56 0.1267 0.1210 0.3393 8.1 1wwz:B
22 5kf2:A 317 45 0.1000 0.0473 0.3333 8.1 5kf1:A, 5kf1:B, 5kf8:A, 5kf9:A, 5kga:A, 5kga:B, 5kgh:A, 5kgh:B, 5kgj:A, 5kgp:A, 5kgp:B
23 6qxl:J 404 60 0.1067 0.0396 0.2667 8.6
24 7lj2:A 507 32 0.0933 0.0276 0.4375 8.9 7lha:A, 7lha:B, 7lj2:B
25 7mq8:LT 869 74 0.1133 0.0196 0.2297 9.1 7mq9:LT

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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