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BioLiP
>protein
DMWIERTADISWESDAEITGSSERVDVRLDDDGNFQLMNDPGAGGGG

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3e90:A 47 47 1.0000 1.0000 1.0000 1.92e-28 3e90:C
2 2yol:A 212 43 0.8723 0.1934 0.9535 8.15e-24 3e90:B, 3e90:D, 2fp7:A, 2fp7:B, 5idk:A, 5idk:B, 5idk:C
3 5lc0:A 193 39 0.4894 0.1192 0.5897 4.53e-11 8a15:B, 8aqa:A, 8aqa:B, 8aqb:A, 8aqb:B, 8aqk:A, 8aqk:B, 7doc:A, 7doc:B, 7h1h:B, 7h1i:B, 7h1j:B, 7h1k:B, 7h1l:B, 7h1m:B, 7h1n:B, 7h1o:B, 7h1p:A, 7h1p:B, 7h1q:B, 7h1r:B, 7h1s:B, 7h1t:B, 7h1u:B, 7h1v:B, 7h1w:B, 7h1x:B, 7h1y:B, 7h1z:B, 7h20:B, 7h21:B, 7h22:A, 7h22:B, 7h23:B, 7h24:B, 7h25:B, 7h27:B, 7h28:B, 7h29:B, 7h2a:B, 7h2b:B, 7h2c:B, 7h2c:A, 7h2d:B, 7h2e:B, 7h2f:B, 7h2g:B, 7h2h:B, 7h2i:B, 7h2j:B, 7h2k:B, 7h2l:B, 7h2m:B, 7h2n:B, 7h2o:B, 7h2p:A, 7h2p:B, 7h2q:B, 7h2r:B, 7h2s:B, 5h4i:B, 5h6v:A, 5h6v:B, 6jpw:C, 6jpw:D, 6jpw:E, 6jpw:F, 6jpw:G, 6jpw:H, 6kk2:A, 6kk2:B, 6kk3:A, 6kk3:B, 6kk4:A, 6kk4:B, 6kk5:A, 6kk5:B, 6kk6:A, 6kk6:B, 6kpq:B, 6l4z:H, 6l50:H, 5lc0:B, 7o2m:A, 7o2m:B, 7o55:A, 7o55:B, 7obv:A, 7obv:B, 7oc2:A, 7oc2:B, 7pfq:A, 7pfq:B, 7pfy:A, 7pfy:B, 7pfz:A, 7pfz:B, 7pg1:A, 7pg1:B, 7pgc:A, 7pgc:B, 7vlg:A, 7vlg:B, 7vlh:A, 7vlh:B, 7vli:A, 7vli:B, 7vxx:D, 7vxy:C, 7vxy:D, 6y3b:A, 6y3b:B, 8y9v:C, 8y9v:D, 5yof:A, 5yof:B, 7zlc:A, 7zlc:B, 7zld:A, 7zld:B, 5zmq:C, 5zmq:D, 5zmq:G, 5zmq:H, 5zms:A, 5zms:B, 5zms:D, 5zms:E, 7zmi:A, 7zmi:B, 7zno:A, 7zno:B, 5zob:A, 5zob:B, 5zob:C, 5zob:D, 7zpd:A, 7zpd:B, 7zq1:B, 7zqf:B, 7ztm:B, 7zum:A, 7zum:B, 7zv4:A, 7zv4:B, 7zvv:B, 7zvv:A, 7zw5:A, 7zw5:B, 7zwk:A, 7zwk:B, 7zys:A, 7zys:B
4 2m9p:A 240 40 0.3404 0.0667 0.4000 6.72e-06 2m9q:A
5 7m1v:A 166 51 0.4043 0.1145 0.3725 0.001
6 6mo0:A 164 22 0.2766 0.0793 0.5909 0.012 6mo0:B, 6mo1:A, 6mo1:B, 6mo2:A, 6mo2:B
7 8xuq:A 885 16 0.1702 0.0090 0.5000 1.0 8xuo:A, 8xuo:G, 8xuq:E, 8xuq:F, 8xuq:G, 8xuv:A, 8xuv:B, 8xuv:C, 8xuv:D, 8xuv:E, 8xuv:F, 8xuv:G, 8xuv:H, 8xuv:I, 8xuv:J, 8xuv:K, 8xuv:L
8 9fp6:A 732 16 0.1702 0.0109 0.5000 1.1 9fp6:B, 9fp6:C, 9fp6:D, 9fp6:E, 9fp6:F
9 8rfh:A 730 16 0.1702 0.0110 0.5000 1.2 8rfh:B
10 5msd:A 636 29 0.1915 0.0142 0.3103 1.7 5msc:A, 5msq:A
11 4c5a:A 306 22 0.2340 0.0359 0.5000 2.3 4c5a:B, 4c5b:A, 4c5b:B, 4c5c:A, 4c5c:B, 2dln:A, 1iov:A, 1iow:A
12 2d5w:A 602 20 0.2128 0.0166 0.5000 4.0 2d5w:B
13 8ow8:A 401 31 0.1702 0.0200 0.2581 5.9
14 7lfj:A 276 28 0.2340 0.0399 0.3929 6.5 7lfi:A, 7lfi:D, 7lfj:D, 7lfk:A, 7lfk:D, 7lfl:A, 7lfm:A, 7lfm:D, 1mhc:A, 1mhc:D
15 7lnp:A 565 17 0.1702 0.0142 0.4706 7.1 7ljj:A, 7lk7:A, 7lnp:C, 7lnp:D, 7lnp:E
16 4yut:A 351 16 0.1489 0.0199 0.4375 7.3 8qfe:A, 8qff:A, 8qfg:A, 8qfh:A, 8qfi:A, 8qfj:A, 5x4t:A, 5x4u:A, 5x4v:A, 4yus:A, 4yut:B
17 4tkc:A 118 19 0.2128 0.0847 0.5263 7.7
18 4f0p:B 452 53 0.3191 0.0332 0.2830 8.6 4f0p:A, 4f0q:A, 4f0q:B, 4f0q:C, 4r28:C
19 6zt3:A 394 26 0.1915 0.0228 0.3462 9.0 4bae:A, 4bae:B, 4bae:C, 4bae:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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