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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DMTWEGEYPPSKVLGPIMSKMPSGLLGLISIACAAVCAYSIAQSGVLQQQPGAYENGSWVKWYYVLGSFGGPLAWGTHVA
SWIQRKNGM

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6l4u:2u 89 89 1.0000 1.0000 1.0000 1.16e-61 6ly5:h
2 7y5e:RN 78 81 0.3708 0.4231 0.4074 6.39e-11 7y5e:R2, 7y7a:R7, 7y7a:Ro
3 8wm6:R 90 88 0.3371 0.3333 0.3409 8.81e-07 8wmj:R, 8wmv:R, 8wmw:R
4 8jw0:h 132 78 0.2584 0.1742 0.2949 5.28e-06
5 7y7b:R 92 25 0.1685 0.1630 0.6000 6.14e-05 7y8a:R
6 8jze:h 131 87 0.2921 0.1985 0.2989 9.51e-05 8jzf:h
7 8jjr:r 131 87 0.2809 0.1908 0.2874 7.33e-04
8 6co7:A 1061 54 0.2135 0.0179 0.3519 0.13 6co7:B, 6co7:C, 6co7:D
9 3c1t:B 326 37 0.1685 0.0460 0.4054 1.6 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
10 6v3f:A 1234 76 0.3034 0.0219 0.3553 2.1 6v3h:A
11 6bcq:B 983 43 0.1685 0.0153 0.3488 3.0 6bco:B, 6bco:D, 6bco:A, 6bco:C, 6bcq:D, 6bcq:A, 6bcq:C
12 8wai:A 277 59 0.1910 0.0614 0.2881 5.3 8kce:A, 8wai:B
13 4v61:BE 266 41 0.1573 0.0526 0.3415 5.6 6eri:AC, 5h1s:E, 5mlc:D, 5mmi:C, 5mmm:C, 5x8p:C, 5x8t:C
14 8k1l:A 979 43 0.1461 0.0133 0.3023 6.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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