Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DMTQLTGAYAAPWLPWIMIPLIFYILPFPIFAIIFLWIERE

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6kmx:aI 41 41 1.0000 1.0000 1.0000 2.45e-23 6kmx:cI, 6kmx:bI
2 7lx0:R 42 40 0.8049 0.7857 0.8250 1.54e-19 7lx0:I, 7lx0:i, 6pnj:I, 6pnj:R, 6pnj:i
3 7s3d:I 42 41 0.8537 0.8333 0.8537 5.34e-19 7s3d:i, 7s3d:R
4 6kmw:aI 38 37 0.3415 0.3684 0.3784 1.76e-06 6kmw:cI, 6kmw:bI
5 4fe1:I 38 37 0.3902 0.4211 0.4324 2.44e-06 7fix:I1, 7fix:I2, 7fix:I3, 1jb0:I, 6k33:aI, 6k33:bI, 6k33:cI, 6lu1:I, 7m75:I, 7m76:I, 7m78:I, 3pcq:I, 6pfy:I, 6pfy:R, 6pfy:e, 6pgk:I, 6pgk:R, 6pgk:e, 6tra:I, 6trc:I, 6trc:7, 6trc:i, 6trd:I, 6trd:7, 6trd:i, 5zf0:I1, 5zf0:I2, 5zf0:I3, 5zf0:I4, 5zf0:I5, 5zf0:I6
6 8am5:i 40 37 0.3659 0.3750 0.4054 7.94e-06 8asl:i, 8asp:i, 6hqb:I, 4l6v:I, 4l6v:i, 4l6v:9, 6nwa:I, 6nwa:i, 6nwa:R, 5oy0:I, 5oy0:i, 5oy0:h, 7umh:I, 7umh:R, 7umh:i, 6uzv:I, 6uzv:i, 6uzv:h
7 6vpv:I 38 35 0.3171 0.3421 0.3714 4.55e-04 6vpv:i, 6vpv:7
8 8wey:I 32 31 0.3415 0.4375 0.4516 5.03e-04 7blz:I, 5zgb:I, 5zgh:I
9 6kif:I 38 37 0.3415 0.3684 0.3784 6.46e-04 6kif:S, 6kif:k, 6kig:I, 6kig:S, 6kig:k
10 6k61:I 34 31 0.3171 0.3824 0.4194 0.007 6jeo:aI, 6jeo:bI, 6jeo:cI, 6jeo:dI, 6k61:i, 6tcl:I1, 6tcl:I2, 6tcl:I, 6tcl:II, 7y3f:I
11 7a4p:I 35 32 0.3171 0.3714 0.4062 0.007 6zzx:I, 6zzy:I
12 7yca:I 35 32 0.3415 0.4000 0.4375 0.009
13 7qco:I 39 33 0.2683 0.2821 0.3333 0.024 7qco:P, 7qco:p, 7qco:i
14 7y7b:I 33 31 0.3171 0.3939 0.4194 0.057 7y8a:I
15 8wm6:I 34 31 0.2927 0.3529 0.3871 0.090 8wmj:I, 8wmv:I, 8wmw:I
16 7dr0:I 30 28 0.2439 0.3333 0.3571 0.10 7dr1:I, 7dr2:aI, 7dr2:bI, 7dr2:cI, 7dr2:dI
17 7dz7:I 42 29 0.2683 0.2619 0.3793 0.13 7bgi:I, 7blx:I, 8cmo:I, 7d0j:I, 7dz8:I, 6ijj:I, 6ijo:I, 6jo5:I, 6jo6:I, 7r3k:I, 7zq9:I, 7zq9:I2, 7zqc:I, 7zqd:I, 7zqd:I2
18 8htu:I 34 32 0.2927 0.3529 0.3750 0.14 7ksq:I, 7kux:I, 6l35:I, 7xqp:I
19 6l4u:I 35 32 0.2927 0.3429 0.3750 0.21
20 6igz:I 32 30 0.2927 0.3750 0.4000 0.34
21 5mwc:D 275 16 0.2195 0.0327 0.5625 0.43
22 8c0t:A 281 16 0.2195 0.0320 0.5625 0.43
23 6xw2:A 387 16 0.2195 0.0233 0.5625 0.43
24 8osi:A 400 16 0.2195 0.0225 0.5625 0.43
25 7y5e:IN 31 30 0.2927 0.3871 0.4000 0.55 7y5e:I2, 7y7a:I7, 7y7a:Io
26 8hir:A 918 25 0.2195 0.0098 0.3600 1.1 8hir:B, 8hir:C, 8hir:D, 8hk6:A, 8hk6:B, 8hk6:C, 8hk6:D, 8hkf:A, 8hkf:B, 8hkf:C, 8hkf:D, 8hkk:A, 8hkk:B, 8hkk:C, 8hkk:D, 8hkm:A, 8hkm:B, 8hkm:C, 8hkm:D, 8hkq:D, 8hkq:A, 8hkq:C, 8hkq:B
27 8bd3:S 257 21 0.1707 0.0272 0.3333 4.1 8bd3:s
28 6roh:A 1112 21 0.2683 0.0099 0.5238 4.6 7oh4:A, 7oh5:A, 7oh6:A, 7oh7:A, 7pem:A, 6roi:A, 6roj:A
29 7wfd:AI 33 28 0.2439 0.3030 0.3571 5.5 8j6z:I, 8j7a:I, 8j7b:I, 7wfe:BI, 7wg5:AI, 7wg5:BI
30 8swn:A 1135 25 0.2683 0.0097 0.4400 9.9

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218