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BioLiP
>protein
DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNK

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1pfb:A 55 55 1.0000 1.0000 1.0000 1.86e-34 1pdq:A
2 3gv6:A 56 53 0.5818 0.5714 0.6038 4.37e-19 3i90:A, 3i90:B
3 5eq0:A 55 50 0.5273 0.5273 0.5800 5.32e-19 3i91:A
4 5ejw:A 80 50 0.5636 0.3875 0.6200 4.05e-17 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
5 5epk:A 54 50 0.4909 0.5000 0.5400 6.24e-17 3h91:A, 3h91:B
6 5epl:B 58 49 0.5273 0.5000 0.5918 1.78e-16 5epl:A
7 6asz:A 53 50 0.4909 0.5094 0.5400 4.94e-13 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
8 2rvn:A 83 47 0.4000 0.2651 0.4681 1.78e-10
9 8uxq:A 170 44 0.4000 0.1294 0.5000 1.35e-09 3fdt:A
10 3tzd:A 58 52 0.4000 0.3793 0.4231 1.42e-09 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
11 1guw:A 73 46 0.4000 0.3014 0.4783 3.00e-08 6d07:A, 6d07:B, 6d08:A, 6d08:B
12 7vyw:A 47 39 0.3636 0.4255 0.5128 3.15e-08
13 3qo2:A 61 41 0.3091 0.2787 0.4146 1.55e-07 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
14 7n27:A 57 42 0.3455 0.3333 0.4524 6.28e-07 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
15 2rsn:A 75 41 0.3636 0.2667 0.4878 1.38e-06 3g7l:A
16 6v2d:G 64 41 0.3455 0.2969 0.4634 2.48e-06 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
17 6v41:AAA 61 41 0.2909 0.2623 0.3902 1.61e-05
18 4u68:A 64 50 0.3455 0.2969 0.3800 5.50e-05 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
19 6s47:Bi 952 34 0.2545 0.0147 0.4118 1.76e-04
20 2b2w:A 177 32 0.2364 0.0734 0.4062 8.10e-04 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
21 7vrf:A 61 38 0.2727 0.2459 0.3947 0.001 7vrf:B
22 4fsx:A 680 25 0.1636 0.0132 0.3600 0.19 4fsx:B, 4ft2:B, 4ft2:A
23 7ubu:A 708 25 0.1636 0.0127 0.3600 0.20 4ft4:A, 4ft4:B
24 3e4v:A 179 21 0.2000 0.0615 0.5238 1.9 3e4v:B
25 3oa6:A 84 25 0.1455 0.0952 0.3200 1.9 3oa6:B
26 3bow:A 680 41 0.2727 0.0221 0.3659 2.1 3df0:A, 1mdw:A, 1mdw:B
27 4iup:B 134 33 0.1818 0.0746 0.3030 2.9 4iup:A, 4iuq:B, 4iuq:A, 4iur:B, 4iur:A, 4iut:B, 4iut:A, 4iuu:B, 4iuu:A, 4iuv:A, 4iuv:B
28 4ft6:A 387 38 0.2182 0.0310 0.3158 3.1
29 6ryr:W 708 40 0.2727 0.0212 0.3750 3.3 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
30 7zpf:A 464 23 0.1636 0.0194 0.3913 3.7 7zpf:B, 7zpf:C, 7zpf:D
31 6qsn:B 884 20 0.1455 0.0090 0.4000 3.8 3eva:A, 3evb:A, 3evc:A, 3evd:A, 3eve:A, 3evf:A, 6qsn:A
32 8wfx:A 801 14 0.1091 0.0075 0.4286 6.1
33 5jh8:A 317 26 0.1636 0.0284 0.3462 6.3
34 4byf:A 698 26 0.1818 0.0143 0.3846 6.8 4byf:C
35 6bcu:A 2204 52 0.2364 0.0059 0.2500 8.1 6bcu:B, 6bcx:A, 6bcx:B, 4drh:B, 4drh:E, 4dri:B, 4drj:B, 8er6:B, 8er6:D, 8er6:F, 8er7:B, 8er7:D, 8er7:F, 8era:A, 9f44:A, 9f44:B, 9f45:A, 9f45:B, 1fap:B, 2fap:B, 3fap:B, 4fap:B, 5flc:B, 5flc:F, 5gpg:B, 4jsp:B, 4jsp:A, 4jsv:B, 4jsv:A, 4jsx:B, 4jsx:A, 4jt5:B, 4jt5:A, 4jt6:B, 4jt6:A, 6m4u:B, 6m4u:F, 6m4w:G, 6m4w:H, 6m4w:I, 1nsg:B, 7pe7:B, 7pe7:A, 7pe8:A, 7pe9:A, 7pea:B, 7pea:A, 7peb:A, 7pec:A, 8ppz:B, 7uxc:A, 7uxh:A, 7uxh:C, 5wbh:C, 5wbh:D, 5wbu:B, 5wbu:A, 6zwo:B
36 6q3m:C 219 40 0.2727 0.0685 0.3750 8.3 6q3m:A, 6q3m:B
37 6zwm:B 2185 52 0.2364 0.0059 0.2500 8.3 6zwm:A
38 6i5b:A 484 20 0.1455 0.0165 0.4000 9.8 6i5b:B
39 6guu:B 204 22 0.2000 0.0539 0.5000 9.8 6guu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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