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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGV
GTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFK
HNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVT
EHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKC
GQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIRVVVTV
EQTEEELERAASTIKEVAQAVLL

The query sequence (length=423) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7k0n:A 464 423 1.0000 0.9116 1.0000 0.0 7cqi:S, 7cqk:S, 7k0i:A, 7k0i:D, 7k0j:A, 7k0k:A, 7k0l:A, 7k0n:E, 7k0o:A, 7k0o:E, 7k0p:A, 7k0p:E, 7k0q:A, 6m4n:A, 6m4n:E, 7yiy:A, 7yj2:A
2 7yjk:A 445 424 0.4421 0.4202 0.4410 2.34e-127 7yjk:E, 7yjn:A, 7yjo:A
3 8qog:B 500 464 0.3735 0.3160 0.3405 3.89e-86 8iaj:A, 8iaj:E, 8iak:A, 8iak:E, 8qof:F, 8qof:B
4 7yj1:B 502 277 0.2270 0.1912 0.3466 4.33e-47 7cqi:T, 7cqk:T, 7k0i:B, 7k0i:E, 7k0j:B, 7k0k:B, 7k0l:B, 7k0m:B, 7k0m:F, 7k0n:B, 7k0n:F, 7k0o:B, 7k0o:F, 7k0p:B, 7k0p:F, 7k0q:B, 6m4n:B, 6m4n:F, 6m4o:T, 7yiu:B, 7yiy:B, 7yj2:B
5 8c81:C 561 259 0.2057 0.1551 0.3359 1.25e-46 8c80:C, 8c82:C, 8c82:G, 8iaj:B, 8iaj:F, 8iak:B, 8iak:F, 8iam:B, 8iam:F, 8qof:C, 8qof:G, 8qog:C
6 8guh:A 394 266 0.2033 0.2183 0.3233 2.12e-45 3a2b:A, 8h1q:A, 8h1y:A, 8h20:A, 8h21:A, 8h29:A, 8iyp:A, 8iyt:A
7 7yjm:B 471 389 0.2577 0.2314 0.2802 2.14e-45 7yjk:B, 7yjk:F, 7yjn:B, 7yjo:B
8 2x8u:A 399 340 0.2364 0.2506 0.2941 2.22e-43 2x8u:B
9 7poa:A 398 278 0.2222 0.2362 0.3381 3.04e-41 7poa:B, 7pob:A, 7pob:D, 7pob:B, 7pob:C, 7poc:A, 7poc:D, 7poc:B, 7poc:C
10 4bmk:A 398 417 0.2813 0.2990 0.2854 1.43e-40 4bmk:B, 2jg2:A, 2w8j:A, 2w8t:A, 2w8u:A, 2w8v:A, 2w8w:A, 2xbn:A
11 3tqx:A 396 390 0.2411 0.2576 0.2615 1.17e-36 3tqx:B
12 7u7h:A 423 326 0.2128 0.2128 0.2761 2.69e-34 7u7h:B
13 1fc4:A 401 275 0.2033 0.2145 0.3127 1.05e-33 1fc4:B
14 6hrh:A 429 266 0.1773 0.1748 0.2820 3.03e-32 6hrh:B, 5qqq:B, 5qqq:A, 5qqr:B, 5qqr:A, 5qqs:B, 5qqs:A, 5qqt:B, 5qqt:A, 5qqu:B, 5qqu:A, 5qqv:B, 5qqv:A, 5qqw:B, 5qqw:A, 5qqx:B, 5qqx:A, 5qqy:B, 5qqy:A, 5qqz:B, 5qqz:A, 5qr0:B, 5qr0:A, 5qr1:B, 5qr1:A, 5qr2:B, 5qr2:A, 5qr3:B, 5qr3:A, 5qr4:B, 5qr4:A, 5qr5:B, 5qr5:A, 5qr6:B, 5qr6:A, 5qr7:B, 5qr7:A, 5qr8:B, 5qr8:A, 5qr9:B, 5qr9:A, 5qra:B, 5qra:A, 5qrb:B, 5qrb:A, 5qrc:B, 5qrc:A, 5qrd:B, 5qrd:A, 5qre:B, 5qre:A, 5qt3:B, 5qt3:A
15 7v58:B 400 389 0.2246 0.2375 0.2442 4.65e-31 7v58:A, 7v5i:A, 7v5i:B, 7v5i:C, 7v5i:D
16 7bxq:A 399 279 0.1986 0.2105 0.3011 7.16e-27 7bxq:B, 7bxr:A, 7bxr:B, 7bxs:A, 7bxs:B
17 5txr:A 479 274 0.1749 0.1545 0.2701 1.14e-24 8eim:A, 8eim:B, 5txr:B
18 2bwo:B 399 271 0.1678 0.1779 0.2620 1.79e-23 2bwn:A, 2bwn:B, 2bwn:D, 2bwn:E, 2bwo:A, 2bwo:D, 2bwo:E, 2bwp:A, 2bwp:B, 2bwp:D, 2bwp:E
19 1dj9:A 383 268 0.1560 0.1723 0.2463 2.11e-17 1dje:A, 8dle:A, 2g6w:A
20 8xha:A 401 236 0.1418 0.1496 0.2542 7.33e-12 8i7u:C, 8i7u:F, 8i7u:A, 8i7u:E, 8i7u:B, 8i7u:D, 8xha:B, 8xhd:A, 8xhd:B, 8xhk:C, 8xhk:A, 8xhk:B, 8xhk:E, 8xhk:D, 8xhk:F
21 2wk8:B 364 286 0.1631 0.1896 0.2413 8.80e-12
22 3hqt:B 386 287 0.1655 0.1813 0.2439 3.02e-11 3hqt:A, 3kki:A, 3kki:B, 2wk8:A, 2wk9:A, 2wk9:B, 2wka:A, 2wka:B
23 5kr3:A 458 119 0.0827 0.0764 0.2941 0.055 5kr3:B, 5kr4:A, 5kr4:B, 5kr5:A, 5kr5:B
24 2e7u:A 424 146 0.0851 0.0849 0.2466 0.18
25 5ijg:B 403 39 0.0331 0.0347 0.3590 0.18 5ijg:A
26 2dr1:A 381 244 0.1158 0.1286 0.2008 0.87 2dr1:B
27 5ti8:B 384 163 0.0922 0.1016 0.2393 1.1
28 7lm0:A 449 83 0.0567 0.0535 0.2892 1.3 7lm0:B
29 8xx9:A 620 41 0.0331 0.0226 0.3415 2.2 8xxa:A
30 4cv4:A 133 82 0.0520 0.1654 0.2683 6.3 4ckt:A, 4ckt:B
31 3pm6:A 287 37 0.0355 0.0523 0.4054 6.7
32 7ypn:D 455 218 0.1182 0.1099 0.2294 9.1 7ypm:A, 7ypm:B, 7ypm:D, 7ypm:C, 7ypn:B
33 4x8c:A 554 221 0.1253 0.0957 0.2398 9.4
34 8wqj:A 472 148 0.0851 0.0763 0.2432 9.8 8wqj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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