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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DLSLTNSSLMPTLNPMIQQLALAIAASWQSLPLKPYQLPEDLGYVEGRLEGEKLVIENRCYQTPQFRKMALELAKVGKGL
DILHCVMFPEPLYGLPLFGCDIVAGPGGVSAAIADLSPTQSDRQLPAAYQKSLAELGQPEFEQQRELPPWGEIFSEYCLF
IRPSNVTEEERFVQRVVDFLQIHCHQSIVAEPLSEAQTLEHRQGQIHYCQQQQKNDKTRRVLEKAFGEAWAERYMSQVLF
DV

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2d1e:A 243 241 0.9917 0.9877 0.9959 2.84e-180 3ajg:A, 3ajg:B, 3ajh:A, 3ajh:B, 5b4h:A, 5b4i:A, 5b4j:A, 4eoc:A, 4eod:A, 4eoe:A, 3f0l:A, 3f0m:A, 3i8u:X, 3i94:A, 3i95:A, 3nb8:A, 3nb9:A, 4qcd:A, 7yk9:A, 7ykb:A
2 6qx6:A 264 211 0.2438 0.2235 0.2796 2.80e-18 6qx6:B
3 2x9o:A 233 212 0.2273 0.2361 0.2594 1.54e-11
4 6kme:A 284 176 0.1653 0.1408 0.2273 0.008 6kmd:A
5 4zxa:W 324 40 0.0579 0.0432 0.3500 0.38 4zxa:X, 4zxa:Y, 4zxa:Z, 4zxc:W, 4zxc:Z
6 2vgr:C 213 172 0.1529 0.1737 0.2151 0.47 2vck:A, 2vck:B, 2vck:C, 2vck:D, 2vgr:A, 2vgr:B, 2vgr:D, 2x9i:A, 2x9i:B, 2x9i:C, 2x9i:D, 2x9j:A, 2x9j:B
7 1ao8:A 162 29 0.0413 0.0617 0.3448 1.8 1bzf:A, 3dfr:A, 1dis:A, 1diu:A, 2hm9:A, 2hqp:A, 2lf1:A, 1lud:A
8 4ac8:A 311 44 0.0620 0.0482 0.3409 3.9 4ac8:B, 4ac8:C, 4ac8:D, 3ee4:A
9 5d00:A 361 77 0.0744 0.0499 0.2338 4.7 5d00:B, 5d01:A, 5d01:B
10 3acl:A 288 71 0.0909 0.0764 0.3099 5.3 4ero:A, 4ewa:A, 4ewd:A, 4ewe:A, 4gul:A, 6h1h:A, 6h1i:A, 4hlt:A, 1j1l:A, 5jct:A, 6n0j:A, 6n0k:A
11 7zr1:D 780 47 0.0661 0.0205 0.3404 6.5 7zr1:C
12 6rxu:UT 2033 42 0.0702 0.0084 0.4048 8.3 6rxv:UT, 6rxx:UT, 6rxz:UT

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218