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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DLLPEHPEFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIY
EKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGA
TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHSSVLAEMAGFELP
IQSHPLQALVSELFEPVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMAAAVELFPIFARAHVL
RTWGGIVDTTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEPHELNKPFSLERFETGHLIDEHGAAA
VAH

The query sequence (length=403) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ad7:B 404 403 0.9429 0.9406 0.9429 0.0 3ad8:B, 3ad9:B, 3ada:B, 2gag:B, 2gah:B, 1vrq:B, 1x31:B
2 1y56:B 374 354 0.2481 0.2674 0.2825 9.37e-39
3 7cyx:A 363 379 0.2333 0.2590 0.2480 3.30e-16 7cyx:B
4 4pab:B 824 394 0.2233 0.1092 0.2284 3.01e-14 5l46:A, 5l46:B, 4p9s:A, 4p9s:B, 4paa:A, 4paa:B, 4pab:A
5 5fjm:A 447 400 0.2333 0.2103 0.2350 1.81e-12 5fjm:B, 5fjn:A, 5fjn:B
6 7exs:A 372 263 0.1861 0.2016 0.2852 3.58e-11
7 1zov:A 381 386 0.2184 0.2310 0.2280 2.83e-10 1zov:B
8 3if9:A 364 373 0.2184 0.2418 0.2359 2.69e-09 3if9:B, 3if9:C, 3if9:D, 1ng3:A, 1ng3:B, 1ng4:A, 1ng4:B, 1ryi:A, 1ryi:B, 1ryi:C, 1ryi:D
9 5i39:A 383 384 0.2084 0.2193 0.2188 4.06e-09
10 2gb0:B 389 390 0.2084 0.2159 0.2154 5.14e-08 2a89:A, 2a89:B, 3bhf:A, 3bhf:B, 3bhk:A, 3bhk:B, 1el5:A, 1el5:B, 1el7:A, 1el7:B, 1el8:A, 1el8:B, 1el9:A, 1el9:B, 1eli:A, 1eli:B, 2gb0:A, 2gf3:A, 2gf3:B, 1l9c:A, 1l9c:B, 1l9d:A, 1l9d:B, 1l9e:A, 1l9e:B, 3m0o:A, 3m0o:B, 3m12:A, 3m12:B, 3m13:A, 3m13:B, 3m13:C, 3m13:D, 3qse:A, 3qse:B, 3qsm:A, 3qsm:B, 3qss:A, 3qss:B
11 1pj6:A 828 221 0.1290 0.0628 0.2353 1.09e-06 3gsi:A, 1pj5:A, 1pj7:A
12 4ysh:A 370 375 0.2208 0.2405 0.2373 5.21e-05 4ysh:B
13 2uzz:B 372 231 0.1514 0.1640 0.2641 7.06e-05 2uzz:A, 2uzz:C, 2uzz:D
14 5hxw:A 433 242 0.1290 0.1201 0.2149 9.51e-05 5hxw:B, 5hxw:C, 5hxw:D, 5hxw:E, 5hxw:F
15 5hxw:A 433 80 0.0620 0.0577 0.3125 0.034 5hxw:B, 5hxw:C, 5hxw:D, 5hxw:E, 5hxw:F
16 7d9f:A 591 47 0.0447 0.0305 0.3830 0.020 7d9f:B, 7d9g:A, 7d9g:B, 7d9h:A, 7d9h:B, 7d9i:A, 7d9i:B, 7d9j:A, 7d9j:B
17 7koe:C 438 41 0.0496 0.0457 0.4878 0.032 7koe:G
18 3fpz:A 311 100 0.0695 0.0900 0.2800 0.046 3fpz:B, 4y4l:A, 4y4l:B, 4y4l:C, 4y4l:D
19 4k5r:B 491 141 0.0844 0.0692 0.2411 0.064 3fmw:A, 3fmw:B, 3fmw:C, 4k5r:A, 4k5s:A
20 3lov:A 451 43 0.0447 0.0399 0.4186 0.11
21 5bva:A 398 80 0.0695 0.0704 0.3500 0.11 5bul:A
22 5kow:A 474 102 0.0620 0.0527 0.2451 0.15 6c7s:A, 5kox:A
23 3cgb:A 444 253 0.1315 0.1194 0.2095 0.19 3cgb:B, 3cgc:A, 3cgc:B, 3cgd:A, 3cgd:B, 3cge:A, 3cge:B
24 5uwy:A 306 73 0.0571 0.0752 0.3151 0.57
25 3nyc:A 381 220 0.1241 0.1312 0.2273 0.58 3nye:A, 3nyf:A, 6p9d:A, 6pld:A, 7rdf:A, 3sm8:A
26 3anv:A 373 35 0.0372 0.0402 0.4286 0.62 3anu:A, 3awn:A, 3awo:A
27 1gpe:B 587 37 0.0471 0.0324 0.5135 0.76 1gpe:A
28 1knp:A 529 44 0.0447 0.0340 0.4091 0.99 1knr:A
29 8bxl:B 590 51 0.0496 0.0339 0.3922 1.0 8bxl:C, 8bxl:D, 8bxl:A, 8bxl:F, 8bxl:E
30 5kxj:A 481 38 0.0422 0.0353 0.4474 1.1
31 1o5w:C 512 61 0.0521 0.0410 0.3443 1.2 1o5w:A, 1o5w:B, 1o5w:D
32 6o9n:A 613 37 0.0397 0.0261 0.4324 1.2 6o9n:B
33 7rk0:B 262 40 0.0447 0.0687 0.4500 1.3 7rk0:A, 7rk0:C, 7rk0:D
34 1rp0:A 278 38 0.0372 0.0540 0.3947 1.3 1rp0:B
35 8c16:D 327 81 0.0521 0.0642 0.2593 1.4 8c16:A, 8c16:B, 8c16:C, 6gas:A, 6gas:B, 6gas:C, 6gas:D
36 5k0a:D 322 34 0.0422 0.0528 0.5000 1.8 5jri:A, 5jri:B, 5k0a:A, 5k0a:B, 5k0a:C
37 5ez7:A 363 69 0.0546 0.0606 0.3188 1.8
38 5mh4:A 303 72 0.0596 0.0792 0.3333 1.9 5mip:A, 5miq:A, 5mir:A, 5mis:A, 5mit:A, 5mjk:A, 5mjk:B, 5mjk:C, 5mjk:D
39 4c6v:A 415 52 0.0447 0.0434 0.3462 2.1 4c6u:A, 4c6w:A, 4c6w:B, 4c6x:A, 4c6x:B, 4c6z:A, 4c6z:B, 4c70:A, 4c70:B, 4c71:A, 4c71:B, 4c72:A, 4c72:B, 4c73:A, 4c73:B, 5ld8:A, 5ld8:B, 6p9k:A, 6p9l:A, 6p9m:A, 5w2o:A, 5w2p:A, 5w2q:A, 5w2s:A, 2wge:A, 2wgg:A, 2wgg:B, 2wgg:C, 2wgg:D, 2wgg:E, 2wgg:F, 2wgg:G, 2wgg:H, 6y2i:AAA, 6y2i:BBB, 6y2j:AAA, 6y2j:BBB, 6y2j:CCC, 6y2j:DDD, 6y2j:EEE, 6y2j:FFF, 6y2j:GGG, 6y2j:HHH
40 1jw9:B 240 56 0.0447 0.0750 0.3214 2.1 1jwa:B, 1jwb:B
41 7tbv:A 682 48 0.0447 0.0264 0.3750 2.6 7tbv:B, 7tbv:C, 7tbv:D
42 3jsk:A 292 48 0.0372 0.0514 0.3125 2.7 3jsk:B, 3jsk:C, 3jsk:D, 3jsk:E, 3jsk:F, 3jsk:G, 3jsk:H, 3jsk:I, 3jsk:J, 3jsk:K, 3jsk:L, 3jsk:M, 3jsk:N, 3jsk:O, 3jsk:P
43 8b7s:A 458 36 0.0397 0.0349 0.4444 3.2
44 3red:A 521 41 0.0447 0.0345 0.4390 3.2 3red:B, 3red:C, 3red:D, 3red:E, 3red:F, 3red:G, 3red:H, 3red:I, 3red:J, 3red:K, 3red:L
45 3hzl:A 394 230 0.1588 0.1624 0.2783 3.3 2oln:A, 2olo:A, 2q6u:A
46 4ynt:A 570 35 0.0397 0.0281 0.4571 3.3 7vkd:A, 7vkf:A, 7vzp:A, 7vzp:B, 7vzs:A, 7vzs:B, 4ynu:A
47 5ufm:A 225 29 0.0298 0.0533 0.4138 3.4 5ufm:B, 5ufn:A, 5ufn:B
48 7olc:La 148 76 0.0546 0.1486 0.2895 3.8 7old:La, 8oo0:La, 7z3n:La, 7z3o:La
49 3gdn:A 521 41 0.0447 0.0345 0.4390 3.8 3gdn:B, 3gdp:A, 3gdp:B, 1ju2:A, 1ju2:B
50 6yw5:ZZ 312 56 0.0447 0.0577 0.3214 4.2 6ywe:ZZ, 6ywx:ZZ, 6ywy:ZZ
51 8am6:AAA 547 44 0.0447 0.0329 0.4091 4.6 8am3:AAA, 8am3:BBB, 8am6:BaB, 8am8:BBB, 8am8:AAA
52 3r9u:A 314 51 0.0471 0.0605 0.3725 4.9 3r9u:B
53 3cty:B 305 33 0.0323 0.0426 0.3939 5.1 3cty:A
54 2q7v:A 313 42 0.0397 0.0511 0.3810 5.5 2q7v:B
55 4x4j:A 482 77 0.0571 0.0477 0.2987 5.7 4x4j:B
56 4usr:A 357 21 0.0273 0.0308 0.5238 6.2
57 5ts5:A 483 51 0.0546 0.0455 0.4314 7.1 4e0v:A, 4e0v:B, 5ts5:B, 5ts5:C, 5ts5:D
58 3dme:A 366 152 0.1017 0.1120 0.2697 7.9 3dme:B
59 2cvj:A 180 21 0.0298 0.0667 0.5714 8.3 2ywl:A, 2ywl:B
60 3lzw:A 329 80 0.0521 0.0638 0.2625 8.5 3lzx:A, 3lzx:B
61 4df9:C 405 64 0.0496 0.0494 0.3125 8.5 4df9:A, 4df9:B, 4df9:D, 4df9:E, 4df9:F
62 4c5o:D 333 29 0.0298 0.0360 0.4138 9.1 4a9w:A, 4a9w:B, 4c5o:A, 4c5o:B, 4c5o:C, 4c5o:E, 4c5o:F, 4c5o:G, 4c5o:H
63 7jyp:A 305 51 0.0521 0.0689 0.4118 9.3
64 6jby:A 521 38 0.0372 0.0288 0.3947 9.8 7bwp:A, 7cgs:A, 5eb4:A, 5eb4:B, 5eb5:A, 5eb5:B, 8jm0:A, 8jm1:A, 8jm2:A, 8jm3:A, 8jm4:A, 8jm5:B, 8jm6:A, 8jm7:A, 8jm8:A, 6lqy:A, 6lr8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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