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BioLiP
>protein
DLKKIESYLDKLRIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIY
RIEDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRE
LKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYIDKVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSKYGVKA
DFEEMLKEVKGE

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jin:A 254 254 0.9921 0.9843 0.9843 1.18e-180 3re4:A, 3re4:B, 1zp9:A, 1zp9:B, 1zp9:C, 1zp9:D, 1ztf:A, 1zth:A, 1zth:B, 1zth:C, 1zth:D
2 6zxf:z 373 229 0.3571 0.2413 0.3930 8.38e-47 6zxg:z, 6zxh:z
3 6zxd:z 292 217 0.3294 0.2842 0.3825 7.41e-44 4otp:A, 6zv6:h, 6zxe:z
4 1zao:A 271 238 0.2619 0.2435 0.2773 1.35e-16 1tqm:A, 1tqp:A, 1zar:A
5 6g18:v 325 220 0.2222 0.1723 0.2545 2.73e-13 6fdm:A, 6fdm:C, 6g51:v, 6hk6:A, 6hk6:B, 6hk6:I, 6hk6:C, 6hk6:D, 6hk6:E, 6hk6:F, 6hk6:G, 6hk6:H, 6hk6:J, 7vbt:A, 7vbt:B, 7wu0:v
6 8cbj:l 286 243 0.2460 0.2168 0.2551 1.06e-11 6eml:r, 6fai:l, 6rbd:l, 6y7c:l
7 4gyi:A 339 218 0.2183 0.1622 0.2523 3.04e-10
8 8c01:r 239 127 0.1429 0.1506 0.2835 7.22e-10 8c00:r
9 7o7j:A 368 64 0.0794 0.0543 0.3125 0.25
10 7sza:A 233 151 0.1667 0.1803 0.2781 0.62 7sza:C, 7szb:A, 7szb:C, 7szc:A, 7szc:C, 7szd:A, 7szd:C, 6wqx:C, 6wqx:D
11 3apt:A 292 101 0.1032 0.0890 0.2574 0.78 3apy:A, 3apy:B, 3apy:C, 3apy:D, 3apy:E, 3apy:F, 3apy:G, 3apy:H, 8eac:A, 7th4:A, 7th4:B, 7th5:A, 7th5:B, 1v93:A
12 7ncf:A 355 44 0.0635 0.0451 0.3636 0.95 6p5s:A
13 6hqv:A 1555 61 0.0794 0.0129 0.3279 2.1 6hqv:B
14 4o6h:B 204 56 0.0675 0.0833 0.3036 2.1 8cnl:B, 8cnl:A, 8cnl:C, 8cnl:D, 8cnl:E, 8cnl:F, 8cnl:G, 8cnl:H, 4o6h:A, 4o6h:C, 4o6h:D, 4o6h:E, 4o6h:F, 4o6h:G, 4o6h:H, 4o6i:A, 4o6i:B
15 6no5:A 239 50 0.0675 0.0711 0.3400 2.9 6no0:A, 6no0:B, 6no1:A, 6no2:A, 6no2:B, 6no3:A, 6no3:B, 6no4:A, 6no5:B, 6no5:C, 6no5:D
16 8h4r:A 287 81 0.0833 0.0732 0.2593 3.6
17 7tom:A 498 66 0.0595 0.0301 0.2273 6.9 7tol:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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