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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DLCQECEDIVHLLTKMTKEDAFQEAIRKFLEQECDILPLELLVPECRQVLDVYLPLVIDYFQSQINPKAICNHVGLCP

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6vzd:E 85 78 1.0000 0.9176 1.0000 1.32e-52 6vyn:A, 6vyn:E, 6vyn:C, 6vyn:B, 6vyn:D, 6vyn:F, 6vyn:G, 6vyn:H, 6vzd:A, 6vzd:C, 6vzd:B
2 7l08:AX 353 67 0.3077 0.0680 0.3582 0.054 8any:AX, 8csp:X, 8csq:X, 8csr:X, 8css:X, 8cst:X, 8csu:X, 8k2a:Se, 7og4:AX, 8oir:AX, 8ois:AX, 7p2e:X, 7pnx:X, 7pny:X, 7pnz:X, 7po0:X, 7po1:X, 7po2:X, 7po3:X, 7qi4:AX, 7qi5:AX, 7qi6:AX, 8qrk:X, 8qrl:X, 8qrm:X, 8qrn:X, 6rw4:X, 6rw5:X, 6vlz:AX, 6vmi:AX, 8xt0:Se, 8xt2:Se, 6zm5:AX, 6zm6:AX, 6zs9:AX, 6zsa:AX, 6zsb:AX, 6zsc:AX, 6zsd:AX, 6zse:AX, 6zsg:AX
3 7a5f:X6 316 67 0.3077 0.0759 0.3582 0.066 7a5g:X6, 7a5i:X6, 7a5k:X6, 3j9m:AX, 6nu2:AX, 6nu3:AX
4 4kx7:A 875 50 0.1538 0.0137 0.2400 0.21 4kx8:A, 4kx9:A, 4kxa:A, 4kxb:A, 4kxc:A, 4kxd:A
5 5htk:A 425 71 0.2436 0.0447 0.2676 0.24 5hr5:A, 5htk:B
6 7pnt:X 357 67 0.3077 0.0672 0.3582 0.31 7pnu:X, 7pnv:X, 7pnw:X
7 4zdt:C 70 23 0.1282 0.1429 0.4348 0.41 4zdt:A
8 6gaw:Ag 353 67 0.2821 0.0623 0.3284 0.77 5aj3:g, 5aj4:Ag, 6gaz:Ag, 3jd5:g, 6neq:g, 6nf8:g, 7nqh:Ag, 7nql:Ag, 7nsi:Ag, 7nsj:Ag, 8oin:AX, 8oip:AX, 6ydp:Ag, 6ydw:Ag
9 6jwz:B 565 53 0.2051 0.0283 0.3019 0.96 6jwr:A, 6jwr:B, 6jwv:A, 6jww:A, 6jww:B, 6jwx:A, 6jwy:A, 6kcl:A, 6kcm:A
10 6jwq:B 590 53 0.2051 0.0271 0.3019 0.96 6jwq:A, 6jws:A, 6jws:B, 6jwt:A, 6jwt:B, 6jwu:A, 6jwz:A, 6kck:A, 6kck:B, 6kcm:B
11 6tdz:C 530 27 0.1154 0.0170 0.3333 1.3 6tdu:AA, 6tdu:AB, 6tdu:AC, 6tdu:BA, 6tdu:BB, 6tdu:BC, 6tdy:A, 6tdy:B, 6tdy:C, 6tdz:B, 6tdz:A, 6te0:C, 6te0:A, 6te0:B
12 6zwm:B 2185 43 0.1795 0.0064 0.3256 2.2 6zwm:A
13 3qta:A 207 75 0.2179 0.0821 0.2267 2.6 3qta:B
14 6bcu:A 2204 43 0.1795 0.0064 0.3256 4.3 6bcu:B, 6bcx:A, 6bcx:B, 4drh:B, 4drh:E, 4dri:B, 4drj:B, 8er6:B, 8er6:D, 8er6:F, 8er7:B, 8er7:D, 8er7:F, 8era:A, 9f44:A, 9f44:B, 9f45:A, 9f45:B, 1fap:B, 2fap:B, 3fap:B, 4fap:B, 5flc:B, 5flc:F, 5gpg:B, 4jsp:B, 4jsp:A, 4jsv:B, 4jsv:A, 4jsx:B, 4jsx:A, 4jt5:B, 4jt5:A, 4jt6:B, 4jt6:A, 6m4u:B, 6m4u:F, 6m4w:G, 6m4w:H, 6m4w:I, 1nsg:B, 7pe7:B, 7pe7:A, 7pe8:A, 7pe9:A, 7pea:B, 7pea:A, 7peb:A, 7pec:A, 8ppz:B, 7uxc:A, 7uxh:A, 7uxh:C, 5wbh:C, 5wbh:D, 5wbu:B, 5wbu:A, 6zwo:B
15 3fdq:A 140 47 0.1923 0.1071 0.3191 5.8 3fdq:B
16 6eri:AP 118 49 0.1923 0.1271 0.3061 6.3 5h1s:R, 5mlc:R, 5mmi:Q, 5mmm:Q, 4v61:BR, 5x8p:Q, 5x8t:Q
17 6go1:A 318 42 0.1795 0.0440 0.3333 6.4 6go1:B
18 6hjw:B 245 40 0.1923 0.0612 0.3750 7.7 6hjw:A
19 8sy6:J 1269 25 0.1538 0.0095 0.4800 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218