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BioLiP
>protein
DKYRRVPMLLKPQQGGQQYFNHFLIRSTNDRLTQQDVDNA

The query sequence (length=40) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pua:CK 177 40 1.0000 0.2260 1.0000 7.15e-24
2 6sgb:CK 211 40 1.0000 0.1896 1.0000 2.50e-23
3 7pub:CK 298 40 1.0000 0.1342 1.0000 6.91e-23 6hiv:CK, 6hiw:CK, 6hiy:CK, 6hiz:CK, 6sg9:CK, 6sga:CK
4 7ane:f 148 35 0.7000 0.1892 0.8000 3.85e-14
5 7cny:A 253 39 0.3250 0.0514 0.3333 1.6 7cny:C
6 4chu:B 127 20 0.2500 0.0787 0.5000 2.7
7 7och:L 1181 17 0.2250 0.0076 0.5294 2.8
8 7ela:A 1402 17 0.2250 0.0064 0.5294 3.0
9 7oe3:L 1478 17 0.2250 0.0061 0.5294 3.0 7oea:L, 7oeb:L
10 7ojj:L 1785 17 0.2250 0.0050 0.5294 3.0
11 7ojn:L 2010 17 0.2250 0.0045 0.5294 3.0 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
12 7ckl:A 1415 17 0.2250 0.0064 0.5294 3.2
13 6klc:A 1436 17 0.2250 0.0063 0.5294 3.4
14 7ojk:L 1843 17 0.2250 0.0049 0.5294 3.6
15 7ojl:L 1498 17 0.2250 0.0060 0.5294 4.0
16 2gsk:A 590 29 0.2750 0.0186 0.3793 6.4 3m8d:A, 1nqg:A, 1nqh:A, 1ujw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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