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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DKVIDVSDFGAIKDTGSDSTHSLYKALQEAKKIGATKITFPKGRYDFYEERAADRLMYISNNDPGIKRITFPLSSFNNLE
IDGNNSTFIFHGGLVPFILDESSHIVLRNFSIDFSRAFHSEALIAGAGKGYLDLKFTDQFPYKINEAGILKFQSQLFDRL
KRKQISQDEYKYEYKRVLEFNFALREPEYMAQDIFTGNALRAEKLNGDVVRIFHPNLKAKVGNILVFQAKHRDYPGVVIS
DSNNVELHNITIHHAGGMGVIAQRSHNITIKDSKVSPSKGRIVSTTADATHFVNCTGKIKLIDNLFESQKNDATNIHGVY
AAIDKIIDDKTVEIKLQHPQQFGFDFIAPEDELELVHGASLITYETNKVVTSTRVSNEVTRVQFIKPFDSRIKEGDSVSK
VRSYAEVIIKGNIIRKNRARGMLLNSRGKTLIENNYFHTPGSAILFEGDANFWFEQGGVSDVTIKNNVFENSFYSQWGKG
IIAVDAGIDDKFKETSRYNKNIVIKGNTFKVFDKAPILNLFSVSNLVFENNIIEKTTEYPERKKYNSLFVINNSDNITIS
INNILQGFSEGKSQLLSPTTTYKR

The query sequence (length=584) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7jw4:A 591 591 0.9949 0.9831 0.9831 0.0 7jw4:B, 7jwf:A, 7jwf:B, 7jwf:C, 7jwf:D
2 8pvs:A 731 573 0.2860 0.2285 0.2914 1.17e-78 8pvs:B
3 8yk3:A 620 616 0.2791 0.2629 0.2646 1.52e-48 8yk3:B
4 7c7d:A 539 117 0.0548 0.0594 0.2735 1.1 7c7d:B
5 8ja4:A 480 59 0.0325 0.0396 0.3220 1.4 8ja6:A, 8jaz:B, 8jaz:A, 8xfq:A, 8xfr:A
6 1u08:A 382 132 0.0497 0.0759 0.2197 2.0 1u08:B
7 5olp:A 432 45 0.0205 0.0278 0.2667 2.6 5olp:B
8 6e1j:A 409 79 0.0360 0.0513 0.2658 2.7 6e1j:B
9 7zaz:CCC 690 74 0.0428 0.0362 0.3378 3.3
10 6ov8:A 429 105 0.0497 0.0676 0.2762 3.6 6oad:A, 6oad:B, 6oad:C, 6oad:D, 6oad:E, 6oad:F, 6oad:G, 6oad:H, 6oad:I, 6oad:J, 6oad:K, 6oad:L, 6ov8:B, 6ov8:C, 6ov8:D, 6ov8:E, 6ov8:F
11 7zaz:AAA 727 73 0.0411 0.0330 0.3288 4.3 7zaz:BBB, 7zaz:DDD, 7zb0:A, 7zb0:B, 7zb0:C, 7zb0:D, 7zb1:A, 7zb1:B, 7zb1:C, 7zb1:D, 7zb2:CCC, 7zb2:FFF
12 8ikx:A 390 41 0.0274 0.0410 0.3902 5.2
13 2uvf:A 571 44 0.0223 0.0228 0.2955 6.1
14 7ohr:I 409 65 0.0274 0.0391 0.2462 7.1
15 3cux:A 501 26 0.0171 0.0200 0.3846 7.6
16 6w4q:D 755 37 0.0188 0.0146 0.2973 9.7 5w6p:A, 5w6p:B, 5w6p:C, 5w6p:D, 5w6p:E, 5w6p:F, 5w6s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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