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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKVIDVSDFGAIKDTGSDSTHSLYKALQEAKKIGATKITFPKGRYDFYEERAADRLMYISNNDPGIKRITFPLSSFNNLE
IDGNNSTFIFHGGLVPFILDESSHIVLRNFSIDFSRAFHSEALIAGAGKGYLDLKFTDQFPYKINEAGILKFQSQLFDRL
KRKQISQDEYKYEYKRVLEFNFALREPEYMAQDIFTGNALRAEKLNDVVRIFHPNLKAKVGNILVFQAKHRDYPGVVISD
SNNVELHNITIHHAGGMGVIAQRSHNITIKDSKVSPSKGRIVSTTADATHFVNCTGKIKLIDNLFESQKNDATNIHGVYA
AIDKIIDDKTVEIKLQHPQQFGFDFIAPEDELELVHGASLITYETNKVVTSTRVSNEVTRVQFIKPFDSRIKEGDSVSKV
RSYAEVIIKGNIIRKNRARGMLLNSRGKTLIENNYFHTPGSAILFEGDANFWFEQGGVSDVTIKNNVFENSFYSQWGKGI
IAVDAGIDDKFKETSRYNKNIVIKGNTFKVFDKAPILNLFSVSNLVFENNIIEKTTEYPERKKYNSLFVINNSDNITISI
NNILQGFSEGKSQLLSPTTTYK

The query sequence (length=582) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jw4:A 591 590 0.9983 0.9831 0.9847 0.0 7jw4:B, 7jwf:A, 7jwf:B, 7jwf:C, 7jwf:D
2 8pvs:A 731 572 0.2835 0.2257 0.2885 3.52e-77 8pvs:B
3 8yk3:A 620 601 0.2715 0.2548 0.2629 1.02e-48 8yk3:B
4 7c7d:A 539 117 0.0550 0.0594 0.2735 1.1 7c7d:B
5 8ja4:A 480 59 0.0326 0.0396 0.3220 1.4 8ja6:A, 8jaz:B, 8jaz:A, 8xfq:A, 8xfr:A
6 1u08:A 382 132 0.0498 0.0759 0.2197 1.9 1u08:B
7 5olp:A 432 45 0.0206 0.0278 0.2667 2.4 5olp:B
8 6e1j:A 409 79 0.0361 0.0513 0.2658 2.8 6e1j:B
9 7zaz:CCC 690 74 0.0430 0.0362 0.3378 3.4
10 6ov8:A 429 105 0.0498 0.0676 0.2762 3.5 6oad:A, 6oad:B, 6oad:C, 6oad:D, 6oad:E, 6oad:F, 6oad:G, 6oad:H, 6oad:I, 6oad:J, 6oad:K, 6oad:L, 6ov8:B, 6ov8:C, 6ov8:D, 6ov8:E, 6ov8:F
11 2ewb:A 486 41 0.0275 0.0329 0.3902 4.4 1bll:E, 1bpm:A, 1bpn:A, 2j9a:A, 1lam:A, 1lan:A, 1lap:A, 1lcp:A, 1lcp:B
12 7zaz:AAA 727 73 0.0412 0.0330 0.3288 4.7 7zaz:BBB, 7zaz:DDD, 7zb0:A, 7zb0:B, 7zb0:C, 7zb0:D, 7zb1:A, 7zb1:B, 7zb1:C, 7zb1:D, 7zb2:CCC, 7zb2:FFF
13 8ikx:A 390 41 0.0275 0.0410 0.3902 5.5
14 2uvf:A 571 44 0.0223 0.0228 0.2955 5.9
15 2a1u:A 315 81 0.0378 0.0698 0.2716 6.4 2a1t:R, 1efv:A
16 7ohr:I 409 65 0.0275 0.0391 0.2462 7.1
17 3cux:A 501 26 0.0172 0.0200 0.3846 7.6
18 6w4q:D 755 37 0.0189 0.0146 0.2973 9.6 5w6p:A, 5w6p:B, 5w6p:C, 5w6p:D, 5w6p:E, 5w6p:F, 5w6s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218