Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMCQF
VDDIQIVKEMLFARKDFTVVDQRDYIASYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYKYSGNIPEKVK
LRLQRASEAASRLDEEMSEIRGEVQEA

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ded:A 196 195 1.0000 0.9541 0.9590 1.28e-135 5ded:D, 5ded:B, 5ded:C, 5ded:E, 5ded:F, 5ded:G, 5ded:H, 5f2v:V, 5f2v:X, 5f2v:T, 5f2v:S, 5f2v:Y, 5f2v:O, 5f2v:Z, 5f2v:W, 5f2v:U, 5f2v:P, 5f2v:R, 5f2v:Q
2 6ewz:A 202 187 0.3102 0.2871 0.3102 1.01e-26 6ewz:B, 6ex0:A, 6ex0:B, 6fgx:A, 6fgx:B
3 5xnx:D 321 112 0.1658 0.0966 0.2768 0.13 5xnx:C
4 5ux2:A 220 54 0.0963 0.0818 0.3333 2.7 5ux2:B
5 7mxw:Z 350 73 0.1070 0.0571 0.2740 3.6 7mxq:Z, 7mxr:Z, 7mxs:Z, 7mxt:Z, 7mxu:Z, 7mxv:Z, 7mxx:Z, 3qe9:Y, 3qe9:Z, 3qea:Z, 3qeb:Z, 5uzv:Z, 5v04:Z, 5v05:Z, 5v06:Z, 5v07:Z, 5v08:Z, 5v09:Z, 5v0a:Z, 5v0b:Z, 5v0c:Z, 5v0d:Z, 5v0e:Z
6 1ae1:B 258 37 0.0642 0.0465 0.3243 4.1 1ae1:A
7 6yxa:A 536 105 0.1551 0.0541 0.2762 4.3 8acu:A, 8acu:B
8 3adr:A 259 53 0.0909 0.0656 0.3208 6.7 3adr:B
9 5lbp:A 196 45 0.0642 0.0612 0.2667 7.2 5l9k:A, 5l9k:B, 5l9q:A, 5l9q:B, 5lau:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218