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BioLiP
>protein
DKQGRTDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNAVDLSCFDFRTGKMM

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ky8:A 70 70 1.0000 1.0000 1.0000 4.60e-48
2 7mwm:A 74 66 0.8857 0.8378 0.9394 6.95e-42 6c1a:A, 6c1a:B, 6c1a:E, 6c1a:F, 6c1t:A, 6c1t:D, 6c1u:A, 6c1u:B, 6c1u:E, 6c1u:F, 6c1v:A, 6c1v:B, 6c1v:E, 6c1v:F, 6c2f:A, 6c2f:D, 6c2f:G, 6c2f:J, 6c2f:M, 6c2f:P, 6cnp:A, 6cnp:B, 6cnq:A, 6cnq:B, 7mwk:A, 7mwk:B, 7mwm:B, 7ray:A
3 6ccg:A 72 66 0.7143 0.6944 0.7576 1.14e-33 6cc8:A, 6cc8:B, 6ccg:B, 6ceu:A, 6ceu:B, 6cev:A, 6cev:B
4 1ig4:A 75 63 0.5429 0.5067 0.6032 2.84e-23 6d1t:A
5 6ogj:B 82 62 0.4429 0.3780 0.5000 5.98e-12 5bt2:A, 6c1y:A, 6c1y:B, 3c2i:A, 6ogj:A, 6ogk:A, 6yww:A
6 7fef:A 48 44 0.3286 0.4792 0.5227 1.35e-10
7 2moe:A 71 66 0.4143 0.4085 0.4394 1.77e-09 4lg7:A
8 3vxv:A 65 43 0.3429 0.3692 0.5581 7.52e-09 3vxx:A, 3vyb:A, 3vyq:A, 3vyq:D
9 7fhj:B 107 51 0.2286 0.1495 0.3137 0.003 7mwh:B, 7mwl:B
10 3kfu:F 447 55 0.2571 0.0403 0.3273 0.85 3kfu:I
11 7s7b:F 352 28 0.2000 0.0398 0.5000 0.87 7s7b:B, 7s7c:B
12 5ktc:A 187 29 0.1571 0.0588 0.3793 1.9 5ktd:A
13 7d41:A 367 36 0.2000 0.0381 0.3889 4.1 7d41:B
14 8t2s:D 389 48 0.2143 0.0386 0.3125 4.3 8t2r:D, 8t2t:D, 7uim:D, 7uin:D
15 7a4p:4 207 28 0.1143 0.0386 0.2857 5.5 6zzx:4, 6zzy:4
16 4coy:A 232 41 0.1857 0.0560 0.3171 5.9 4cou:A, 4cov:A, 4cow:A, 4coz:A
17 5a0y:F 248 24 0.1429 0.0403 0.4167 6.8 5a0y:C, 5a8k:C, 5a8k:F, 7b2h:C, 7b2h:F, 5g0r:F, 5g0r:C, 1hbm:C, 1hbm:F, 1hbn:C, 1hbn:F, 1hbo:C, 1hbo:F, 1hbu:C, 1hbu:F, 3m1v:F, 3m1v:C, 3m2r:F, 3m2r:C, 3m2u:F, 3m2u:C, 3m2v:F, 3m2v:C, 3m30:F, 3m30:C, 3m32:F, 3m32:C, 1mro:F, 1mro:C, 3pot:F, 3pot:C, 7suc:c, 7suc:C, 7sxm:F, 7sxm:C
18 6d50:B 840 27 0.1571 0.0131 0.4074 7.9 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
19 1g9u:A 353 42 0.2143 0.0425 0.3571 8.0 1jl5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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