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BioLiP
>protein
DKPLRKISAAFKKLAIIVNSPNPEVPVTQFSHACSLVSPLFGCLGIAFKFAEMDYVAKVDDLVRASSSISTLVVMMDKDI
EADCVRKAGSHTRNLLRVKRGLDMVKVLFEQIIASEGDNSLKDPATKSYAQVFAPHHGWAIRKAVSLGMYALPTRAHLLN
MLKEDEAAAKIHMQSYVNSSAPLITYLDNLFLSKQLGIDW

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4nti:A 202 200 0.9950 0.9851 0.9950 3.07e-149 4nt2:A, 4ntg:A, 4ntg:B, 4nti:B, 4nto:A, 4nto:B, 4nto:C
2 5kdi:A 211 181 0.2250 0.2133 0.2486 2.55e-11 5kdi:B
3 4kbr:B 207 158 0.1900 0.1836 0.2405 7.33e-09 4kbr:A, 4kbr:C, 4kbr:D, 4kbr:F, 4kbr:G, 4kbr:H
4 4gxg:A 209 167 0.2200 0.2105 0.2635 9.21e-09 2bv7:A, 2euk:A, 2eum:A, 2evd:A, 2evl:A, 2evs:A, 2evs:E, 4gh0:A, 4ghp:A, 4ghs:A, 4ghs:B, 4gix:A, 4gjq:A, 4gjq:B, 4gvt:A, 4gxd:A, 4gxg:B, 4gxg:D, 4gxg:E, 4h2z:A, 3ric:A, 3rzn:A, 3s0i:A, 3s0k:A, 1sx6:A
5 4k80:A 209 158 0.1950 0.1866 0.2468 6.57e-07 4k84:A, 4k84:B, 4k85:A, 4k85:B, 4k85:C, 4k85:D, 4k8n:A, 4k8n:E, 4k8n:B, 4k8n:C, 4k8n:D, 4k8n:F, 4kf6:A, 4kf6:B, 4kf6:C, 4kf6:D, 4kf6:E, 4kf6:F
6 8ouw:2 701 59 0.0850 0.0243 0.2881 0.15
7 4fdg:B 592 144 0.1850 0.0625 0.2569 1.7 8eaf:A, 8eaf:B, 8eaf:C, 8eaf:D, 8eaf:E, 8eaf:F, 8eag:B, 8eag:C, 8eag:D, 8eag:E, 8eag:F, 8eag:A, 8eah:A, 8eah:B, 8eah:C, 8eah:D, 8eah:E, 8eah:F, 8eai:B, 8eai:C, 8eai:D, 8eai:E, 8eai:F, 8eai:A, 8eaj:A, 8eaj:B, 8eaj:C, 8eaj:D, 8eaj:E, 8eaj:F, 8eak:B, 8eak:C, 8eak:D, 8eak:E, 8eak:A, 8eak:F, 8eal:A, 8eal:B, 8eal:C, 8eal:D, 8eal:E, 8eal:F, 8eam:B, 8eam:C, 8eam:D, 8eam:E, 8eam:A, 8eam:F, 4fdg:A, 4fdg:C, 4fdg:D, 4fdg:E, 6mii:A, 6mii:B, 6mii:C, 6mii:D, 6mii:E, 6mii:F, 2vl6:A, 2vl6:B, 2vl6:C, 6wnz:B, 6wnz:A
8 2c49:A 299 36 0.0700 0.0468 0.3889 1.9 2c49:B
9 7e6g:A 264 29 0.0600 0.0455 0.4138 3.4
10 7l6s:A 396 76 0.1050 0.0530 0.2763 3.7
11 5ex8:A 414 97 0.1350 0.0652 0.2784 3.9 5ex9:A
12 8a0c:A 1116 59 0.0850 0.0152 0.2881 5.2 8a0c:B, 8a0m:A, 8a0m:C
13 8a0m:B 964 59 0.0850 0.0176 0.2881 5.6
14 8a0m:D 975 59 0.0850 0.0174 0.2881 5.8
15 1hsk:A 303 60 0.0700 0.0462 0.2333 5.8
16 8heh:B 147 48 0.0800 0.1088 0.3333 8.2 8heh:A
17 5kqa:A 110 57 0.0900 0.1636 0.3158 9.3
18 2v9k:A 467 33 0.0700 0.0300 0.4242 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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