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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKV
KKTAEASKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEE
CSGQLVFKSDAYYCTGDVTAWTKCMVKTQTPNRKEWVTPKEFREISYLKKLKVKKQDRIFPP

The query sequence (length=222) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8g0h:C 227 222 1.0000 0.9780 1.0000 1.86e-167 4av1:A, 4av1:C, 4dqy:D, 4dqy:A, 4dqy:B, 4dqy:E, 8g0h:A, 2jvn:A, 3od8:A, 3od8:B, 3od8:C, 3od8:E, 3od8:G, 3od8:H, 3oda:A, 3oda:B, 3oda:C, 3oda:E, 3oda:G, 3oda:H, 4opx:D, 4opx:A, 4oqa:D, 4oqa:A, 4oqb:D, 4oqb:A, 2riq:A, 7s68:A, 7s6h:C, 7s6h:A, 7s6m:A, 7s6m:C, 7s81:I, 7s81:F, 7s81:G, 7s81:O, 7s81:J, 7s81:B
2 2dmj:A 106 86 0.3874 0.8113 1.0000 4.73e-61
3 2n8a:A 214 120 0.4189 0.4346 0.7750 1.13e-60 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
4 2n8a:A 214 93 0.1396 0.1449 0.3333 1.59e-07 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
5 1v9x:A 114 85 0.1802 0.3509 0.4706 5.58e-20
6 2cs2:A 134 94 0.1396 0.2313 0.3298 1.74e-08
7 1uw0:A 117 79 0.1126 0.2137 0.3165 1.03e-07
8 2w4l:C 142 104 0.0991 0.1549 0.2115 1.0
9 8ova:A1 262 76 0.0901 0.0763 0.2632 1.2 8ove:A1, 4v8m:A1
10 8ity:3 374 75 0.1036 0.0615 0.3067 2.9 8iue:3, 8iuh:3, 7xur:B, 7zwc:b, 7zwd:b, 7zx7:b, 7zx8:b, 7zxe:b
11 3zw3:A 831 71 0.0946 0.0253 0.2958 9.8 2a4z:A, 4fhj:A, 4fhk:A, 6fh5:A, 6gq7:A, 4hvb:A, 5jha:A, 5jhb:A, 7jwe:A, 4kzc:A, 3lj3:A, 3mjw:A, 3nzu:A, 3p2b:A, 3qk0:A, 3sd5:A, 5t23:A, 6t3b:A, 6t3c:A, 4wwo:A, 4wwp:A, 6xrm:A, 6xrn:A, 3zvv:A
12 8sq0:A 1402 57 0.0721 0.0114 0.2807 9.9 8sq0:B, 8sql:A, 8sqm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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