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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKLAVLYAEHIATLQQRTRTITEREGLEGLVIHSGQAKRQFLDWMYYPFKVNPQFKAWLPVIDNPHCWIVVDGASKPKLI
FYRPVDFWHKVPDEPRDFWAEYFDIELLVQPDQVEKLLPYDKANYAYIGEYLEVAQALGFSIMNPEPVMNYLHFHRAYKT
QYELECLRQANRIAVEGHKAARDTFFNGGSEFDIQHAYLMATRQSENEMPYGNIVALNENCAIYLYTHFEPTAPHTHHSF
LIDAGANFNGYAADITRTYDFKKSGEFSDLIQVMTEHQIALGKALKPGLLYGELHLECHQRVAQVLSDFNIVKLPAADIV
ERGITSTFFPHGLGHHLGLQVIDMGGFMADESGTHQAPPEGHPFLRCTRLIEKNQVFTIEPGLYFIDSLLGDLAQTDNKQ
FINWEKVEEFKPFGGIRIEDNIIVHEDSLENMTRDLHLD

The query sequence (length=439) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ah7:A 439 439 0.9932 0.9932 0.9932 0.0 6ah7:B, 6ah7:C, 6ah7:D, 6ah8:A, 6ah8:B, 6ah8:C, 6ah8:D, 7e5c:A, 7e5c:B, 7e5c:C, 7e5c:D
2 4zwu:A 435 439 0.7882 0.7954 0.7882 0.0 3l24:A, 3l7g:A, 4zwo:A, 4zwo:B, 4zwp:A, 4zwp:B, 4zwu:B
3 3l24:B 417 438 0.7563 0.7962 0.7580 0.0 3l24:C, 3l7g:B, 3l7g:C
4 3rva:A 445 436 0.6059 0.5978 0.6101 0.0
5 4qr8:A 441 440 0.4989 0.4966 0.4977 1.41e-158 4qr8:B
6 5mc1:B 485 456 0.2574 0.2330 0.2478 1.43e-33 6h2p:A, 6h2p:B, 6h2q:A, 6h2q:B, 5m4g:A, 5m4g:B, 5m4j:A, 5m4j:B, 5m4l:A, 5m4l:B, 5m4q:A, 5m4q:B, 5mby:A, 5mby:B, 5mbz:A, 5mbz:B, 5mc0:A, 5mc0:B, 5mc1:A, 5mc2:A, 5mc2:B, 5mc3:A, 5mc3:B, 5mc4:A, 5mc4:B, 5mc5:A, 5mc5:B, 2okn:A, 2okn:B, 6qsb:A, 6qsb:B, 6qsc:A, 6qsc:B, 6sre:A, 6sre:B, 6srf:A, 6srf:B, 6srg:B
7 6srg:A 455 452 0.2483 0.2396 0.2412 9.67e-29
8 2bh3:A 440 290 0.1936 0.1932 0.2931 1.03e-20 1a16:A, 2bha:A, 2bhb:A, 2bhd:A, 2bn7:A, 2bws:A, 2bwt:A, 2bwv:A, 2bww:A, 2bwx:A, 2bwy:A, 1jaw:A, 1m35:A, 1m35:B, 1m35:C, 1m35:D, 1m35:E, 1m35:F, 1n51:A, 2v3x:A, 2v3y:A, 2v3z:A, 1w2m:A, 1w2m:B, 1w2m:C, 1w2m:D, 1w2m:E, 1w2m:F, 1w7v:A, 1w7v:B, 1w7v:C, 1w7v:D, 1wbq:A, 1wbq:B, 1wbq:C, 1wbq:D, 1wl6:A, 1wl9:A
9 4pv4:A 436 288 0.1891 0.1904 0.2882 6.41e-20 4pv4:B
10 5wze:B 449 287 0.1663 0.1626 0.2544 1.02e-18 5wze:A, 5wze:C, 5wze:D
11 6a9t:A 417 296 0.1663 0.1751 0.2466 7.83e-12 6a9u:A, 6a9v:A
12 5cdl:A 349 290 0.1777 0.2235 0.2690 6.76e-11 5cdv:A, 5giq:A
13 1wn1:A 356 295 0.1549 0.1910 0.2305 1.33e-10 1wn1:B
14 3ig4:A 419 231 0.1321 0.1384 0.2511 2.77e-09 3ig4:B, 3ig4:C, 3ig4:D, 3ig4:E, 3ig4:F
15 1pv9:A 337 295 0.1549 0.2018 0.2305 5.73e-09
16 3q6d:A 355 292 0.1617 0.2000 0.2432 1.40e-08 3q6d:B, 3q6d:C, 3q6d:D
17 5x49:A 441 197 0.1207 0.1202 0.2690 5.82e-07 5x49:B
18 1wy2:A 351 300 0.1481 0.1852 0.2167 9.47e-07 1wy2:B
19 5cnx:A 360 300 0.1617 0.1972 0.2367 5.01e-06 5cnx:B, 5cnx:C
20 1pv9:B 318 294 0.1526 0.2107 0.2279 5.70e-06
21 2zsg:A 356 289 0.1640 0.2022 0.2491 6.13e-06
22 7k3u:A 362 201 0.1071 0.1298 0.2338 1.94e-04 7k3u:B, 7k3u:C, 7k3u:D, 7k3u:E, 7k3u:F, 7k3u:G, 7k3u:H, 7k3u:I, 7k3u:J, 7n02:A, 7n02:B, 6xmr:A, 6xmr:B, 4zng:C, 4zng:B, 4zng:A
23 4fkc:A 370 269 0.1390 0.1649 0.2268 0.003 4rgz:A, 4rgz:N, 4rgz:1, 4rgz:e
24 5jr6:B 545 247 0.1298 0.1046 0.2308 0.035
25 4ege:A 371 283 0.1367 0.1617 0.2120 0.045
26 5jqk:A 631 248 0.1298 0.0903 0.2298 0.12 5jqk:B, 5jr6:A
27 4rzy:A 439 179 0.0979 0.0979 0.2402 0.50 4rzy:B, 4rzy:C, 4rzy:D, 4rzz:A, 4rzz:B, 4rzz:C, 4rzz:D, 4s00:A, 4s00:B, 4s00:C, 4s00:D, 4s01:A, 4s01:B, 4s01:C, 4s01:D
28 4s2r:P 615 183 0.1002 0.0715 0.2404 2.0 4s2r:Q, 4s2t:P, 4s2t:Q
29 7nxd:B 690 49 0.0364 0.0232 0.3265 3.1 7ceb:B, 7cec:B, 9ckv:B, 7nwl:B, 3vi3:B, 3vi3:D, 3vi4:D, 3vi4:B, 4wjk:B, 4wk0:B, 4wk2:B, 4wk4:B
30 7yjm:B 471 47 0.0364 0.0340 0.3404 3.3 7yjk:B, 7yjk:F, 7yjn:B, 7yjo:B
31 8kaq:A 401 93 0.0615 0.0673 0.2903 7.3 8kaq:B, 8kaq:C
32 3ctz:A 617 74 0.0456 0.0324 0.2703 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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