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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKKWLGTPIEEMRRMPRCGIRLPLLRPSANHTVTIRVDLLRAGEVPKPFPTHYKDLWDNKHVKMPCSEQNLYPVAGSRWE
LIQTALLNKFTRPQNLKDAILKYNVAYSKKWDFTALIDFWDKVLEEAEAQHLYQSILPDMVKIALCLPNICTQPIPLLAA
AMNHSITMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTAAAPTGLVTF
TRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEEIRFLINPELIISRLFTEVLDH
NECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYCGFLRPGV
SSENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERDVVYFTFGDSELMRDIYSMHIFLTERKLTVGDVYKLLLRYYN
EECRNCSTPGPDIKLYPFIYHAVESC

The query sequence (length=506) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3uel:A 521 513 0.9328 0.9060 0.9201 0.0 5a7r:A, 4b1h:A, 4b1i:A, 4b1j:A, 6hh6:A, 6hmk:A, 6hml:A, 6hmm:A, 6hmn:A, 7kfp:A, 7kg0:A, 7kg1:A, 7kg6:A, 7kg7:A, 7kg8:A, 5lhb:A, 4n9y:A, 4n9z:A, 4n9z:B, 4na0:A, 4na0:B, 4na0:C, 4na4:A, 4na4:B, 4na4:C, 6o9x:A, 6o9y:A, 6oa0:A, 6oa1:A, 6oa3:A, 6oak:A, 6oal:A, 3uel:B, 3uel:C
2 8adj:A 515 499 0.4328 0.4252 0.4389 5.72e-133 8adj:B, 8adj:C
3 4epp:A 439 354 0.2174 0.2506 0.3107 4.98e-38 4epp:B, 4epq:A, 4l2h:A
4 4yo7:A 287 191 0.0889 0.1568 0.2356 0.063
5 1cd2:A 206 47 0.0356 0.0874 0.3830 0.38 2cd2:A, 3cd2:A, 1daj:A, 1dyr:A, 1e26:A, 2fzh:A, 2fzi:A, 4g8z:X, 4ixe:D, 4ixf:X, 4ixg:X, 1klk:A, 1ly3:A, 1ly4:A, 3nz6:X, 3nz9:X, 3nza:X, 3nzb:X, 3nzc:X, 4qjz:D, 1s3y:A, 3td8:A, 1vj3:A
6 6mgr:C 369 94 0.0514 0.0705 0.2766 0.99 6mgr:A, 6mgr:B, 6mgr:D, 4mz1:A, 4mz1:B, 4mz1:C, 4mz8:A, 4mz8:B, 4mz8:C, 4mz8:D, 4r7j:A, 5uqf:A, 5uqf:B, 5uqf:C, 5uqg:A, 5uqg:B, 5uqg:H, 5uqg:C, 5uqg:G, 5uqg:D, 5uqg:E, 5uqg:F, 5uqh:A, 5uqh:B, 5uqh:C, 5uqh:D, 5uqh:E, 5uqh:F, 5uqh:G, 5uqh:H, 5urq:A, 5urq:D, 5urq:B, 5urq:C, 5urq:E, 5urq:H, 5urq:F, 5urq:G
7 1oao:C 729 187 0.0909 0.0631 0.2460 3.1 3git:A, 3git:B, 3git:C, 3git:D, 3git:E, 3git:F, 3i01:M, 3i01:N, 3i01:O, 3i01:P, 3i04:M, 3i04:N, 3i04:O, 3i04:P, 1mjg:M, 1mjg:N, 1mjg:O, 1mjg:P, 1oao:D, 6x5k:M, 6x5k:N, 6x5k:O, 6x5k:P, 2z8y:M, 2z8y:N, 2z8y:O, 2z8y:P
8 4y0e:H 308 85 0.0395 0.0649 0.2353 5.6 4y0e:A, 4y0e:B, 4y0e:C, 4y0e:D, 4y0e:E, 4y0e:F, 4y0e:G
9 2gx2:F 217 62 0.0336 0.0783 0.2742 9.3 2gx2:A, 2gx2:D, 2gx2:H, 2gx2:K, 5hzs:A, 5hzs:B, 5hzs:C, 5hzs:D, 5hzs:E, 5hzs:F, 5hzs:G, 5hzs:H, 5hzs:I, 5hzs:J, 5hzs:K, 5hzs:L, 5hzt:B, 5hzt:C, 5hzt:D, 5hzt:E, 5hzt:F, 5hzt:G, 5hzt:H, 5hzt:I, 5hzt:J, 5hzt:L
10 1joi:A 128 37 0.0237 0.0938 0.3243 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218