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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGG
VPVQGSKYAA

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6a6j:A 90 88 0.9778 0.9778 1.0000 5.03e-60 6a6j:C, 6a6l:A, 6ktc:A, 6kug:A, 6lmr:A, 5yts:A, 5ytt:A, 5ytv:A, 5ytx:A
2 7f3i:A 93 89 0.9111 0.8817 0.9213 4.28e-57 7f3i:C, 7f3i:E, 7f3j:A, 7f3j:C, 7f3j:E, 7f3j:G, 7f3k:A, 7f3l:A
3 5udz:A 139 84 0.4000 0.2590 0.4286 2.64e-15 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
4 4a75:A 89 82 0.3889 0.3933 0.4268 1.78e-14 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
5 2es2:A 67 66 0.3222 0.4328 0.4394 3.07e-12 3pf4:B, 3pf5:B, 3pf5:A
6 7ot5:B 66 68 0.3111 0.4242 0.4118 2.45e-11
7 1c9o:A 66 66 0.3222 0.4394 0.4394 7.53e-11 1c9o:B, 2hax:A, 2hax:B
8 7oii:B 39 37 0.2000 0.4615 0.4865 7.92e-07
9 7dm1:B 334 60 0.2111 0.0569 0.3167 0.046 7dm1:A, 7dm2:A, 1pc3:A, 1pc3:B
10 5ly8:A 230 50 0.1778 0.0696 0.3200 5.1
11 3wem:A 830 42 0.1444 0.0157 0.3095 6.3 3w37:A, 3wel:A, 3wen:A, 3weo:A
12 3q4r:A 170 55 0.1556 0.0824 0.2545 6.8 3q4o:A, 3q4q:A
13 8fqc:A 168 48 0.1556 0.0833 0.2917 7.7
14 5yo9:B 366 37 0.1444 0.0355 0.3514 8.9 5yoa:B
15 6g1h:A 342 79 0.1778 0.0468 0.2025 8.9 6g1m:A, 6g1m:B, 6g1m:C, 6g1m:D
16 3n6r:A 591 81 0.2333 0.0355 0.2593 9.1 3n6r:C, 3n6r:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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