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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAHTVSYFCDHVYSEHEIGRWADIYCIIPATANILGQ
TANGVAMNLVATTVLAHPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAFEIATGTRKPNRGLITPDKAL
LAIEQGFAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQA

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5h75:D 225 214 1.0000 0.9422 0.9907 5.01e-159 5h75:A, 5h75:B, 5h75:C, 1p3y:1
2 7cfu:F 175 148 0.2547 0.3086 0.3649 4.33e-28 7cfu:H, 7cfu:S, 7cfu:T, 7cfu:P, 7cfu:A, 7cfu:B, 7cfu:C, 7cfu:D, 7cfu:E, 7cfu:G, 7cfu:I, 7cfu:J, 7cfu:K, 7cfu:L, 7cfu:M, 7cfu:N, 7cfu:O, 7cfu:Q, 7cfu:R, 7cfu:U, 7cfu:V, 7cfu:W, 7cfu:X
3 5coc:A 124 49 0.2170 0.3710 0.9388 3.17e-24
4 8cpl:C 499 52 0.2217 0.0942 0.9038 9.42e-24 8cpl:A, 8cpl:B, 8cpl:D, 1lp1:B, 4uox:A, 4uox:B, 4uox:C, 4uox:D, 4uoy:A, 4uoy:B, 4uoy:C, 4uoy:D
5 3qjg:A 171 168 0.2736 0.3392 0.3452 2.96e-23 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K
6 5cbn:A 176 48 0.2123 0.2557 0.9375 9.46e-23
7 5ewx:B 214 49 0.2028 0.2009 0.8776 2.49e-21 5ewx:A
8 1g5q:A 174 156 0.2217 0.2701 0.3013 1.21e-20 1g5q:D, 1g5q:G, 1g5q:L, 1g63:A, 1g63:B, 1g63:H, 1g63:C, 1g63:J, 1g63:D, 1g63:F, 1g63:E, 1g63:G, 1g63:I, 1g63:L, 1g63:K
9 6fgo:F 67 60 0.1934 0.6119 0.6833 3.51e-16 6fgo:E, 6fgo:G, 6fgo:H
10 8jxr:C 341 50 0.1604 0.0997 0.6800 1.12e-14
11 7rxc:B 439 50 0.1604 0.0774 0.6800 1.26e-14 7rxd:B
12 4bxl:A 46 42 0.1509 0.6957 0.7619 5.03e-14 4bxl:B, 5k5g:B, 5k5g:C, 2otk:E, 2otk:F
13 6tgv:C 389 144 0.1887 0.1028 0.2778 1.40e-13 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
14 5h7d:E 113 45 0.1557 0.2920 0.7333 1.07e-12 5h7d:F, 5h7d:G, 5h7d:H, 5h7d:K, 5h7d:L, 5h7d:O, 5h7d:P
15 1e20:A 185 151 0.1934 0.2216 0.2715 5.99e-12 1mvl:A, 1mvn:A
16 1qzu:A 160 144 0.1840 0.2437 0.2708 7.32e-11 1qzu:B, 1qzu:C, 1qzu:D
17 6jls:A 162 147 0.2075 0.2716 0.2993 5.64e-08
18 6eoa:A 193 78 0.1132 0.1244 0.3077 1.98e-05
19 4b0n:A 379 58 0.0708 0.0396 0.2586 0.25 4b0n:B
20 7vgb:A 681 59 0.0802 0.0250 0.2881 0.61 7vgb:B, 7vgc:A
21 7et9:A 254 27 0.0566 0.0472 0.4444 2.2 7et9:B, 7et9:C, 7eta:A, 7eta:B, 7eta:C, 7etb:A, 7etb:B, 7etb:C, 7etc:A, 7etc:C, 7etc:B, 7etd:A, 7etd:B, 7etd:C, 7ete:A, 7ete:C, 7ete:B, 7etf:A, 7etf:B, 7etf:C, 7etg:A, 7etg:B, 7etg:C, 7eth:A, 7eth:B, 7eth:C, 7eti:A, 7eti:B, 7eti:C
22 7r07:F 600 55 0.0849 0.0300 0.3273 4.3 7r06:A, 7r06:F, 7r06:B, 7r06:E, 7r06:C, 7r06:D, 7r07:A, 7r07:B, 7r07:C, 7r07:D, 7r07:E
23 6gjc:A 2770 29 0.0566 0.0043 0.4138 6.7 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
24 6sav:A 438 37 0.0613 0.0297 0.3514 9.5 6sav:B
25 3awj:A 380 100 0.1085 0.0605 0.2300 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218