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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGL
TDRSRLGCQICLTKAMDNMTVRVP

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3p1m:F 128 104 0.9423 0.7656 0.9423 1.09e-70 1e6e:B, 1l6u:A, 3p1m:A, 3p1m:B, 3p1m:C, 3p1m:D, 3p1m:E, 3p1m:G, 3p1m:H
2 7m8i:A 572 103 0.9327 0.1696 0.9417 5.19e-69 1ayf:A, 1ayf:B, 2bt6:A, 2bt6:B, 1cje:A, 1cje:B, 1cje:C, 1cje:D, 4dvq:A, 4dvq:B, 4dvq:C, 4dvq:D, 4dvq:E, 4dvq:F, 4dvq:G, 4dvq:H, 4dvq:I, 4dvq:J, 4dvq:K, 4dvq:L, 1e6e:D, 7e7f:A, 4fdh:A, 4fdh:B, 4fdh:C, 4fdh:D, 4fdh:E, 4fdh:F, 4fdh:G, 4fdh:H, 4fdh:I, 4fdh:J, 4fdh:K, 4fdh:L, 2jqr:B, 1l6v:A, 6m7x:A, 6m7x:B, 7m8i:B, 7m8i:C, 7m8v:A, 7m8v:B, 7m8v:C, 7m8v:D, 7m8v:E, 7m8v:F, 7m8v:G, 7m8v:H, 7m8v:I, 7m8v:J, 7m8v:K, 7m8v:L, 3n9y:C, 3n9y:D, 6xz8:A, 6xz8:B, 6xz8:C, 6xz9:A, 6xz9:B, 6xz9:C, 4zgx:A, 4zgx:B, 4zgx:C, 4zgx:D, 4zgx:E, 4zgx:F, 4zgx:G, 4zgx:H, 4zgx:I, 4zgx:J, 4zgx:K, 4zgx:L
3 2wlb:A 103 102 0.4615 0.4660 0.4706 7.82e-30 2wlb:B
4 2mjd:A 115 104 0.4519 0.4087 0.4519 1.55e-26 2mje:A
5 5uj5:A 132 98 0.3942 0.3106 0.4184 2.00e-23
6 2y5c:A 107 104 0.3750 0.3645 0.3750 1.74e-22 2y5c:B
7 3hui:A 112 101 0.3269 0.3036 0.3366 2.00e-15
8 1i7h:A 109 94 0.3365 0.3211 0.3723 7.00e-14 1i7h:B, 1i7h:C
9 4ltu:A 106 102 0.2981 0.2925 0.3039 3.36e-12 4ltu:B
10 1e9m:A 106 100 0.3269 0.3208 0.3400 1.55e-11 1uwm:A
11 6nbl:D 107 101 0.3173 0.3084 0.3267 5.08e-11 1gpx:A, 5gxg:B, 4jws:C, 4jws:D, 4jwu:C, 4jwu:D, 4jx1:C, 4jx1:D, 4jx1:G, 4jx1:H, 3lb8:C, 3lb8:D, 2m56:B, 6nbl:C, 1oqq:A, 1oqq:B, 1oqr:A, 1oqr:B, 1oqr:C, 1pdx:A, 1put:A, 1r7s:A, 1r7s:B, 1r7s:C, 3w9c:B, 1xln:A, 1xln:B, 1xlo:A, 1xlo:B, 1xlp:A, 1xlp:B, 1xlp:C, 1xlq:A, 1xlq:B, 1xlq:C, 1yji:A, 1yjj:A
12 3lxf:A 104 95 0.2692 0.2692 0.2947 5.84e-11 3lxf:B, 3lxf:C, 3lxf:D, 3lxf:E
13 1b9r:A 105 102 0.3173 0.3143 0.3235 1.54e-10
14 3ah7:A 109 92 0.3365 0.3211 0.3804 2.55e-10
15 8bef:O 123 106 0.2981 0.2520 0.2925 3.32e-05 7aqq:O, 7ar8:O, 7arb:O, 8bpx:O, 8bq5:O, 8bq6:O
16 8e73:FD 122 106 0.2788 0.2377 0.2736 0.004
17 6hdt:A 127 44 0.1442 0.1181 0.3409 0.94 6hdt:B, 6hdt:C, 6hdt:D
18 4jos:B 230 42 0.1250 0.0565 0.3095 2.3 4jos:A
19 5x7u:A 546 58 0.1923 0.0366 0.3448 2.3
20 5b0s:B 355 33 0.0962 0.0282 0.3030 2.5 5b0q:A, 5b0q:B, 5b0r:A, 5b0r:B, 5b0s:A
21 2gag:A 965 33 0.1442 0.0155 0.4545 5.0 2gah:A
22 4wxl:C 165 63 0.1827 0.1152 0.3016 6.1 4wxl:A, 4wxl:B, 4wxl:D
23 5o2w:A 248 33 0.1250 0.0524 0.3939 6.8 5o2x:A
24 5uxy:A 276 83 0.2788 0.1051 0.3494 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218