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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DKELKIVICGGGSTYTPGIVKDLLDQRQKINIKELWLYDIDEERQNKVALIVKEVIKTEAPEVVLKVTVNPKEAFTDADY
IMAQMRVGGLKMRVKDEQICLKHGCVGQETCGAGGMTYGMRTIYPMVQLIDYCEEYASKKYWIVNYSNPAAIVAKATYKL
RPKARIINICDMPVEIEARMAEILDCKLEDIESDYFGLNHYGWFTHVRCKGVDVTDKLKEHVRKYGYVSEASMNLLKDPD
WVHTFKNSALISSMFTDYLPNTYWQYYLMPDSIVDYMDINNTRGMQVINGREKRIFKAAEDIREGKPVDLQQFYVGVHGK
FIVKVVESLIHDERSRQLVIVPNNGAIENLSDDATVEIPGYVTDRGVEPVRVGSIPRFYKGLIEQQDACEGLLVEAAIEH
SYEKALMAFTMNRTIPSSLVAKKLLDDMIEANKGYWPELK

The query sequence (length=440) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wbt:A 442 442 1.0000 0.9955 0.9955 0.0 6wbt:B, 6wbt:C, 6wbt:D
2 1u8x:X 436 440 0.4614 0.4656 0.4614 5.71e-139
3 6dvv:A 435 442 0.4636 0.4690 0.4615 5.82e-137 6dux:A, 6dux:B, 6dvv:B
4 6vc6:B 440 443 0.4386 0.4386 0.4357 5.06e-122 6vc6:A, 6vc6:C, 6vc6:D
5 5c3m:B 411 441 0.3136 0.3358 0.3129 2.69e-74 5c3m:A, 5c3m:C, 5c3m:D
6 1up7:A 414 437 0.3159 0.3357 0.3181 4.89e-60 1up6:A, 1up6:C, 1up6:G, 1up7:B, 1up7:C, 1up7:D, 1up7:E, 1up7:F, 1up7:G, 1up7:H
7 3fef:A 434 462 0.2409 0.2442 0.2294 1.92e-22 3fef:B, 3fef:C, 3fef:D
8 1obb:A 478 409 0.2136 0.1967 0.2298 5.22e-14 1obb:B
9 1vjt:A 471 418 0.2068 0.1932 0.2177 5.00e-09 7br4:A, 7brf:A, 7ctl:A, 7ctm:A, 6kcx:A, 3u95:A, 3u95:B, 3u95:C, 3u95:D, 3u95:E, 3u95:F
10 5hzd:A 476 83 0.0500 0.0462 0.2651 0.69 5i49:A, 5ido:A
11 6d6q:M 709 142 0.0750 0.0465 0.2324 2.1 6d6r:M, 7z52:B
12 3vvb:A 270 43 0.0295 0.0481 0.3023 2.2
13 1s40:A 187 93 0.0523 0.1230 0.2473 2.4
14 3w1v:A 347 43 0.0295 0.0375 0.3023 2.6 4g5h:A, 3vvc:A, 3w1v:B
15 4d8f:B 334 99 0.0614 0.0808 0.2727 7.2 2ani:A, 4d8f:A, 4d8f:C, 4d8f:D, 4d8g:A, 4d8g:B, 4d8g:C, 4d8g:D, 4m1i:A, 4m1i:B, 4m1i:C, 4m1i:D, 1syy:A
16 8d2o:A 749 34 0.0295 0.0174 0.3824 8.1
17 5ijj:A 175 28 0.0250 0.0629 0.3929 8.6 5ijj:B
18 8d2q:A 906 34 0.0295 0.0143 0.3824 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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