Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DISTAVVVTTISDGGFLDRLAPALRDAGARLIVIPDRNTGPALFAACERHRRLGLDVVCPSVAEQQDLLERLAVPDLIPY
HSDNRRNVGYLMAWMEGFDVIVSMDDDNLPTTDDFVERHQVVCQGPRTQPVTASSDGWFNNCALLEVEPTEVFPRGFPFH
ARPAHAQARTSVCERPADVRINAGLWLGDPDVDAITRLAVRPNALAHSGGSVVLAEGTWCPVNSQNTAVHRDALPAYYFL
RMGQPVDGVPMERFGDIFSGYFVQVCAQHLGHAVRFGDPVVEHPRNEHDLLDDLHKEVPAVRLLDDILDHLRDHPLEGGD
YLETYESLSYALQEIAERVNGRAWSPDARAFLHRSAHLMRSWTGALRTVAGT

The query sequence (length=372) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xpt:A 375 370 0.9946 0.9867 1.0000 0.0 8hl8:A, 8hl8:C, 7xpr:A, 7xpr:B, 7xps:A, 7xps:B, 7xpt:B, 7xpu:A, 7xpu:B, 7xpv:A, 7xpv:B, 7yua:A, 7yua:B, 7yua:C, 7yua:D
2 1kl7:A 509 135 0.0995 0.0727 0.2741 0.13 1kl7:B
3 3efv:A 459 53 0.0511 0.0414 0.3585 1.7 3efv:B, 3efv:C, 3efv:D
4 4n5f:A 378 134 0.0941 0.0926 0.2612 2.2 4n5f:B
5 4kg0:A 157 112 0.0726 0.1720 0.2411 2.7
6 2oua:A 188 97 0.0618 0.1223 0.2371 2.7 2oua:B
7 6pd0:A 366 34 0.0323 0.0328 0.3529 7.9 6pcz:A, 6pcz:B, 6pd0:B
8 5wti:Z 982 31 0.0376 0.0143 0.4516 7.9
9 5fob:A 642 50 0.0403 0.0234 0.3000 9.6 7bag:A, 3g6j:A, 3g6j:C, 2ice:A, 2ice:D, 2icf:A, 5o32:A, 5o32:E, 2qki:A, 2qki:D, 2wii:A, 2xwb:A, 2xwb:C
10 5zqx:A 536 23 0.0269 0.0187 0.4348 9.8 5zqs:A, 5zqs:B, 5zqx:B, 5zqx:C, 5zqx:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218