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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPVIHI
RSRGDIPRACQKSLRPVPPSPKIDRGWVCVFQLQDGKTLGLKI

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ibi:B 127 123 1.0000 0.9685 1.0000 2.71e-88 4ibb:A, 4ibb:B, 4ibc:A, 4ibc:B, 4ibd:A, 4ibd:B, 4ibe:A, 4ibe:B, 4ibf:A, 4ibf:B, 4ibg:A, 4ibg:B, 4ibi:A, 4ibj:A, 4ibj:B, 4ibk:A, 4ibk:B, 3l25:A, 3l25:B, 3l25:D, 3l25:E, 3l26:A, 3l26:B
2 3ks8:B 124 122 0.8780 0.8710 0.8852 3.44e-79 3ks8:C, 3ks8:D, 3ks8:A, 4lg2:A, 4lg2:D
3 4ghl:A 132 123 0.4309 0.4015 0.4309 5.23e-34 4gha:A, 4gha:E, 4gha:G, 4gha:C, 4ghl:D, 4ghl:B, 4ghl:C
4 6eet:A 443 41 0.1220 0.0339 0.3659 1.1 6bxz:C, 6bxz:A, 6c10:A, 5kj4:A, 5kj4:B, 5kj4:C, 5kj4:D
5 5cwa:A 505 56 0.1220 0.0297 0.2679 2.7
6 5nem:3 220 16 0.0732 0.0409 0.5625 3.5
7 7bvd:A 499 56 0.1138 0.0281 0.2500 4.1
8 4quw:A 223 49 0.1301 0.0717 0.3265 4.6 6jzu:B, 6jzy:B, 6jzz:B, 4rc5:A, 4rc5:B, 4rc6:A, 4rc6:B, 4rc7:A, 4rc7:B, 4rc8:A
9 4e2x:A 405 39 0.1057 0.0321 0.3333 6.7 4e2w:A, 4e2y:A, 4e2z:A, 4e30:A, 4e31:A, 4e32:A, 4e33:A, 3ndi:A, 3ndj:A
10 2z9v:A 392 64 0.1382 0.0434 0.2656 7.0 2z9v:B, 2z9w:A, 2z9w:B, 2z9x:A, 2z9x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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