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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DIRKYIARKSAIKIFNQSINYSATKWPPEPIDKNIHMIWIGTKNISEKNIKLSIDTAKKNPDYNTSIIYDSGISGHEGAK
KFMLEKFQDSNVNIIDFRKKSYFSQLKQEPSFAYYEQVIAENKYAQASDILRLLVLKYEGGIYKDIDDIQVKGFGSLTFP
KGIGVMREYAPATAFPNTPIAVTKNNPIINKTLDLAVSNYQRGEKNVLKLAGPDVFTQALYQEIPGLDSKVLNAQLYQLE
LAKRQALGVPDEQLTSAEKEKINRPYQSIRGLSGYVE

The query sequence (length=277) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4mix:B 277 277 1.0000 1.0000 1.0000 0.0 4mix:A
2 8ovs:AAA 276 270 0.6859 0.6884 0.7037 3.40e-139 8ovs:BBB
3 8jhz:A 2615 79 0.1083 0.0115 0.3797 8.69e-06
4 8jhz:A 2615 41 0.0542 0.0057 0.3659 0.21
5 7pog:A 2382 76 0.1047 0.0122 0.3816 2.47e-05 4dmw:A, 3ho6:A, 3ho6:B, 4r04:A, 3srz:A, 3ss1:A, 7u2p:A, 7uby:B, 7uby:A, 5uqk:A, 5uql:A
6 7pog:A 2382 42 0.0542 0.0063 0.3571 0.41 4dmw:A, 3ho6:A, 3ho6:B, 4r04:A, 3srz:A, 3ss1:A, 7u2p:A, 7uby:B, 7uby:A, 5uqk:A, 5uql:A
7 8y9b:B 1607 67 0.1011 0.0174 0.4179 3.32e-04
8 8y9b:B 1607 56 0.0686 0.0118 0.3393 0.048
9 8qeo:A 2146 67 0.1011 0.0130 0.4179 4.88e-04
10 8qeo:A 2146 42 0.0578 0.0075 0.3810 0.041
11 8qen:A 2363 67 0.1011 0.0118 0.4179 5.65e-04 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
12 8qen:A 2363 42 0.0578 0.0068 0.3810 0.040 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
13 8y9c:B 1609 135 0.1444 0.0249 0.2963 0.002
14 8y9c:B 1609 46 0.0758 0.0131 0.4565 0.003
15 6oq5:A 2346 135 0.1444 0.0171 0.2963 0.003 6oq7:A, 7s0z:B, 7s0z:A
16 6oq5:A 2346 46 0.0758 0.0090 0.4565 0.003 6oq7:A, 7s0z:B, 7s0z:A
17 7ml7:A 1216 67 0.0939 0.0214 0.3881 0.005
18 7ml7:A 1216 56 0.0650 0.0148 0.3214 2.5
19 8x2h:A 2363 217 0.1949 0.0229 0.2488 0.023 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
20 8x2i:A 2303 217 0.1949 0.0234 0.2488 0.025
21 6rtg:A 503 75 0.0903 0.0497 0.3333 0.11
22 5h60:A 304 48 0.0686 0.0625 0.3958 2.3 7ym5:A
23 7nds:A 294 82 0.0650 0.0612 0.2195 5.6 7ndr:D
24 8h1i:A 250 41 0.0469 0.0520 0.3171 7.2
25 6u83:A 154 94 0.0903 0.1623 0.2660 7.9
26 3fpj:B 265 70 0.0614 0.0642 0.2429 9.1 3fpe:A, 3fpe:B, 3fpf:A, 3fpf:B, 3fph:A, 3fph:B, 3fpj:A, 3o31:A, 3o31:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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