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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DIPQPIRGDKGATVKIPRNIERDRQNPDMLVPPETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMR
LKPGAIRELHYHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENST
FQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYI
ADSTNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIG
DEPLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKHPVVKKK

The query sequence (length=377) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vg3:A 382 377 0.9973 0.9843 0.9973 0.0 5hi0:A, 1j58:A, 1l3j:A, 4met:A, 4met:B, 4met:C, 4met:D, 3s0m:A, 6tzp:A, 6ufi:A, 1uw8:A, 2uy8:A, 2uy9:A, 2uya:A, 2uyb:A, 2v09:A, 5vg3:B, 5vg3:C
2 6l9i:A 338 338 0.5305 0.5917 0.5917 1.28e-153 6l9i:B, 6l9i:C, 6l9i:D, 6l9i:E, 6l9i:F
3 2vqa:A 356 326 0.3607 0.3820 0.4172 2.78e-86 2vqa:B, 2vqa:C
4 2vqa:A 356 139 0.1273 0.1348 0.3453 7.81e-22 2vqa:B, 2vqa:C
5 2vqa:A 356 156 0.1247 0.1320 0.3013 9.30e-18 2vqa:B, 2vqa:C
6 4lum:A 190 68 0.0637 0.1263 0.3529 9.60e-06 2gc0:A, 2gc0:B, 2gc1:A, 2gc1:B, 2gc2:A, 2gc2:B, 2gc3:A, 2gc3:B, 4lta:A, 4lta:B, 4luk:A, 4lul:A, 4lul:B, 4lum:B, 1qxr:A, 1qxr:B, 1qy4:A, 1qy4:B, 1x7n:A, 1x82:A
7 3fz3:A 388 92 0.0716 0.0696 0.2935 1.06e-04 3fz3:D, 3fz3:E
8 3fz3:A 388 122 0.0716 0.0696 0.2213 0.83 3fz3:D, 3fz3:E
9 3fz3:A 388 28 0.0318 0.0309 0.4286 3.9 3fz3:D, 3fz3:E
10 3fz3:B 410 92 0.0716 0.0659 0.2935 1.14e-04 3fz3:C, 3fz3:F
11 3fz3:B 410 122 0.0716 0.0659 0.2213 0.80 3fz3:C, 3fz3:F
12 3fz3:B 410 28 0.0318 0.0293 0.4286 4.0 3fz3:C, 3fz3:F
13 1j3p:A 187 72 0.0584 0.1176 0.3056 2.64e-04 1j3q:A, 1j3q:B, 1j3r:A, 1j3r:B
14 7zvy:A 112 91 0.0716 0.2411 0.2967 0.002
15 7zvm:A 104 91 0.0637 0.2308 0.2637 0.004
16 1o4t:A 115 76 0.0610 0.2000 0.3026 0.045 1o4t:B
17 4yrd:B 346 69 0.0531 0.0578 0.2899 0.44 3vhr:A, 4yrd:A
18 3st7:A 369 69 0.0531 0.0542 0.2899 0.46 2zkl:A
19 2evx:A 382 92 0.0610 0.0602 0.2500 0.47
20 5tg0:A 137 92 0.0663 0.1825 0.2717 0.61 6a53:A, 6a53:B, 6a54:A, 6a54:B, 6a55:A, 6a55:B, 8hlf:A, 8hlf:B, 5tfz:A, 5tfz:B
21 3ht2:A 143 95 0.0663 0.1748 0.2632 0.78 3ht2:C
22 2d5f:B 385 63 0.0451 0.0442 0.2698 0.86 2d5f:A, 2d5h:A, 2d5h:C, 2d5h:D, 2d5h:E, 2d5h:F, 1od5:A, 1od5:B
23 2d40:A 289 82 0.0637 0.0830 0.2927 0.86 2d40:B, 2d40:C, 2d40:D
24 3h50:A 114 66 0.0451 0.1491 0.2576 1.1
25 5cu1:A 197 68 0.0477 0.0914 0.2647 4.5
26 6yxa:A 536 43 0.0451 0.0317 0.3953 4.8 8acu:A, 8acu:B
27 5fl3:A 354 104 0.0822 0.0876 0.2981 4.9
28 6htq:x 341 43 0.0451 0.0499 0.3953 5.4
29 6km8:A 345 99 0.0557 0.0609 0.2121 5.9
30 7z87:A 3689 94 0.0716 0.0073 0.2872 6.1
31 8eza:L 3720 94 0.0716 0.0073 0.2872 6.1 8eza:C, 7lt3:C, 7lt3:L
32 4dnr:A 1031 55 0.0424 0.0155 0.2909 6.2 3k0i:A, 7kf6:A, 7kf6:B, 7kf6:C, 7kf7:B, 7kf8:B, 7kf8:C, 3t53:A
33 7k1n:A 3634 94 0.0716 0.0074 0.2872 6.3 7z88:A
34 7k0y:A 3669 94 0.0716 0.0074 0.2872 6.3
35 7sud:A 3740 94 0.0716 0.0072 0.2872 6.4
36 5y3r:C 3636 94 0.0716 0.0074 0.2872 6.5
37 7k1k:A 3604 94 0.0716 0.0075 0.2872 6.5 7k1b:A
38 8ez9:L 3662 94 0.0716 0.0074 0.2872 6.6 8ez9:C
39 6zhe:A 3768 94 0.0716 0.0072 0.2872 6.6
40 6zhe:F 3731 94 0.0716 0.0072 0.2872 6.6
41 7su3:A 3802 94 0.0716 0.0071 0.2872 6.6
42 7k1j:A 3584 94 0.0716 0.0075 0.2872 6.7 7k19:A
43 7k17:B 3645 94 0.0716 0.0074 0.2872 6.7 7k17:A
44 6zha:A 3707 94 0.0716 0.0073 0.2872 6.9 6zh8:A
45 8ezb:C 3724 94 0.0716 0.0073 0.2872 6.9 8ezb:L
46 7nfc:A 3562 94 0.0716 0.0076 0.2872 7.0 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
47 7nfe:A 3585 94 0.0716 0.0075 0.2872 7.1
48 7otm:A 3656 94 0.0716 0.0074 0.2872 7.4 7otp:A, 7otv:A, 7otw:A, 7oty:A
49 7sgl:A 3852 94 0.0716 0.0070 0.2872 7.4
50 8bot:A 3528 94 0.0716 0.0077 0.2872 7.7
51 6v7g:A 357 166 0.1034 0.1092 0.2349 7.8 1dgr:X, 1dgr:V, 1dgr:N, 1dgw:X, 6v7j:A, 6v7j:B, 6v7j:C, 6v7l:A, 6v7l:B, 6v7l:C
52 5fok:A 656 51 0.0477 0.0274 0.3529 8.7 5fok:B
53 3qyy:B 156 63 0.0504 0.1218 0.3016 8.9 3qyy:A
54 5wxu:B 400 61 0.0451 0.0425 0.2787 9.3 5wxu:A, 5wxu:D, 5wxu:F, 5wxu:C, 5wxu:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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