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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DILPLSPVSRNRLAQVKRKILVLDLDETLIHSHHDGPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVF
TASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPS
DTALLNLLPMLDALRFTADVRSVLSRNSAKGSESNSLEQAEDLKAFERRLTEYIHCLQAPSIIAARCRTVLAEYNMS

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ujm:B 237 237 1.0000 1.0000 1.0000 1.75e-176 8ujm:A
2 2hhl:C 184 179 0.3249 0.4185 0.4302 4.37e-43 2hhl:A, 2hhl:D
3 1t9z:A 181 174 0.3376 0.4420 0.4598 2.99e-42 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
4 2q5e:A 181 172 0.3080 0.4033 0.4244 7.74e-42 2q5e:B, 2q5e:C, 2q5e:D, 2q5e:E, 2q5e:F, 2q5e:G, 2q5e:H
5 4qqf:F 191 167 0.2447 0.3037 0.3473 3.84e-28 3qle:A
6 3ef1:A 372 153 0.1688 0.1075 0.2614 1.56e-05 3ef0:A, 4xpz:A, 4xq0:A
7 7y7b:L 150 62 0.0717 0.1133 0.2742 0.74 7y8a:L
8 1b0b:A 142 53 0.0549 0.0915 0.2453 1.8 1ebt:A, 1flp:A, 1moh:A
9 7rty:A 244 18 0.0422 0.0410 0.5556 4.1 7rty:B
10 5idj:A 242 24 0.0464 0.0455 0.4583 4.7 5idm:A, 5idm:B
11 4z61:A 610 45 0.0717 0.0279 0.3778 5.9 4z5w:B, 4z5w:A, 4z61:B
12 3rcd:A 281 41 0.0591 0.0498 0.3415 7.5 3rcd:C
13 5xvs:B 366 40 0.0591 0.0383 0.3500 7.9 5xvs:A, 5zlt:B, 5zlt:D
14 6z1p:By 107 45 0.0506 0.1121 0.2667 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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