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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DILAAGREELMAALAEGDEHAAVDLAMRLLDGGVPADVVLLELVADAQVEIGVLWQANRWSVAQEHAATAISERVIAAVG
DRAAAAPTRGHVVVACLDGEWHALPARIVAEVLRGRGWRVTFLGASVPAAHLVPYLEEHGPDAVALSCTLPRGLPRADQV
VAACRATGTPVLVGGLGFGPDGRWARVLGAGTWAPTARAAADLLDRPEPRPADPEYAALRARRAELVDAGLAALHEWFPP
LRDYDARRLDATLDDLGDIVDHLAASVYVDDPELFGEFVTWTAEVLAARGVSPASVEVALEAIARVLDDHPRTRHHLDHG
RRALAAHLEH

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8j2x:A 337 335 1.0000 0.9792 0.9851 0.0 8j2w:A, 8j2w:B
2 8j2y:A 327 311 0.3485 0.3517 0.3698 3.31e-37 8j2y:B
3 8sse:A 507 171 0.1394 0.0907 0.2690 1.79e-07 8sse:B, 8sse:C, 8sse:D, 8sse:E, 8sse:F
4 7xcn:P 215 123 0.1000 0.1535 0.2683 2.68e-07 7xcn:M, 7xcn:N, 7xcn:O, 7xcn:Q, 7xcn:R
5 5c8d:E 280 184 0.1788 0.2107 0.3207 6.16e-05 8c31:A, 8c31:B, 8c31:C, 8c31:D, 8c32:A, 8c32:B, 8c32:C, 8c32:D, 8c33:A, 8c33:B, 8c33:C, 8c33:D, 8c34:A, 8c34:B, 8c34:C, 8c34:D, 8c35:A, 8c35:B, 8c35:C, 8c35:D, 8c36:A, 8c36:B, 8c36:C, 8c36:D, 8c37:A, 8c37:B, 8c37:C, 8c37:D, 8c73:A, 8c73:B, 8c73:C, 8c73:D, 8c76:A, 8c76:B, 8c76:C, 8c76:D, 5c8a:A, 5c8a:B, 5c8a:C, 5c8a:D, 5c8d:A, 5c8d:B, 5c8d:C, 5c8d:D, 5c8d:F, 5c8d:G, 5c8d:H, 5c8e:A, 5c8e:B, 5c8e:C, 5c8e:E, 5c8e:F, 5c8e:G, 5c8e:D, 5c8e:H, 5c8f:A, 3whp:A
6 3bul:A 577 90 0.0788 0.0451 0.2889 3.82e-04 6bdy:A, 1bmt:A, 1bmt:B, 6bm5:A, 6bm6:A, 3iv9:A, 3iva:A, 1k7y:A, 1k98:A, 1msk:A
7 2i2x:B 258 90 0.0758 0.0969 0.2778 0.002 2i2x:D, 2i2x:F, 2i2x:H, 2i2x:J, 2i2x:L, 2i2x:N, 2i2x:P
8 7te2:A 205 114 0.1091 0.1756 0.3158 0.15
9 2jg1:A 318 49 0.0485 0.0503 0.3265 1.2 2jg1:B, 2jg1:C, 2jg1:D, 2jgv:B, 2jgv:D
10 1t8y:F 461 51 0.0576 0.0412 0.3725 1.7 1t8s:A, 1t8s:B, 1t8s:C, 1t8s:D, 1t8s:E, 1t8s:F, 1t8y:C, 1t8y:B, 1t8y:E, 1t8y:A
11 7d58:A 1387 50 0.0424 0.0101 0.2800 3.0 7a6h:A, 7ae1:A, 7ae3:A, 7aea:A, 7fji:A, 7fjj:A, 8ity:A, 8iue:A, 8iuh:A
12 7dn3:A 1293 49 0.0424 0.0108 0.2857 3.7 7du2:A
13 6j76:A 477 50 0.0576 0.0398 0.3800 4.5 6j76:B
14 8uhe:K 593 75 0.0636 0.0354 0.2800 5.6
15 5tnv:A 306 72 0.0818 0.0882 0.3750 7.2
16 7zer:A 474 33 0.0424 0.0295 0.4242 8.1 7zf0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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