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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DIGRSSVRPYLEECTRRFQEMFDRHVVTRPTKVELTDAELREVIDDCNAAVAPLGKTVSDERWISYVGVVLWSQSPRHIK
DMEAFKAVCVLNCVTAVWDDMDPALHDFGLFLPQLRKICEKYYGPEDAEVAYEAARAFVTSDHMFRDSPIKAALCTTSPE
QYFRFRVTDIGVDFWMKMSYPIYRHPEFTEHAKTSLAARMTTRGLTIVNDFYSYDREVSLGQITNCFRLCDVSDETAFKE
FFQARLDDMIEDIECIKAFDQLTQDVFLDLIYGNFVWTTSNKRYKTAVNDVNSRIQ

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ao3:A 303 293 0.9831 0.9604 0.9932 0.0 7ao0:A, 7ao0:B, 7ao1:A, 7ao1:B, 7ao2:A, 7ao2:B, 7ao3:B, 7ao5:A, 7ao5:B, 6ggi:A, 6ggi:B, 6ggj:A, 6ggj:B, 6ggk:A, 6ggk:B, 6ggl:A, 6ggl:B, 5gue:A, 5gue:B, 5gue:C, 5gue:D, 8qws:A, 8qws:B
2 2l51:A 102 62 0.0608 0.1765 0.2903 0.46 2l51:B
3 6vyd:A 304 148 0.1115 0.1086 0.2230 0.71 6vyd:B, 6w26:I, 6w26:A
4 4b29:A 195 93 0.0878 0.1333 0.2796 1.3
5 3k2s:A 243 59 0.0541 0.0658 0.2712 1.7 6cch:A, 3k2s:B, 7rsc:D, 7rsc:E, 7rse:D, 7rse:E, 6w4e:D
6 6djk:A 376 37 0.0439 0.0346 0.3514 2.3
7 3cke:D 284 85 0.0743 0.0775 0.2588 2.8
8 8h6u:A 338 120 0.1014 0.0888 0.2500 3.2 8h6u:B, 8h6u:C, 8h6u:D
9 3mmt:A 341 24 0.0405 0.0352 0.5000 4.2 3mmt:B, 3mmt:C, 3mmt:D
10 5yhw:A 453 50 0.0574 0.0375 0.3400 5.1 5yhw:B, 5yhw:C, 5yhw:F
11 2vk1:A 562 67 0.0709 0.0374 0.3134 8.6 1pvd:A, 1pvd:B, 1pyd:A, 1pyd:B, 1qpb:A, 1qpb:B, 2vk1:B, 2vk1:C, 2vk1:D, 2vk8:A, 2vk8:B, 2vk8:C, 2vk8:D, 2w93:A, 2w93:B, 2w93:C, 2w93:D
12 4dz4:B 323 42 0.0574 0.0526 0.4048 8.8 4dz4:A, 4dz4:C, 4dz4:D, 4dz4:E, 4dz4:F
13 1xrs:A 516 77 0.0642 0.0368 0.2468 9.3
14 4dzh:A 439 90 0.0811 0.0547 0.2667 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218