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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DIGRSSVRPYLEECTRRFQEMFDRHVVTRPTKVELTDAELREVIDDCNAAVAPLGKTVSDERWISYVGVVLWSQSPRHIK
DMEAFKAVCVLNCVTAVWDDMDPALHDFGLFLPQLRKICEKYYGPEDAEVAYEAARAFVTSDHMFRDSPIKAALCTTSPE
QYFRFRVTDIGVDFWMKMSYPIYRHPEFTEHAKTSLAARMTTRGLTIVNDFYSYDREVSLGQITNCFRLCDVSDETAFKE
FFQARLDDMIEDIECIKAFDQLTQDVFLDLIYGNFVWTTS

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ao3:A 303 277 0.9821 0.9076 0.9928 0.0 7ao0:A, 7ao0:B, 7ao1:A, 7ao1:B, 7ao2:A, 7ao2:B, 7ao3:B, 7ao5:A, 7ao5:B, 6ggi:A, 6ggi:B, 6ggj:A, 6ggj:B, 6ggk:A, 6ggk:B, 6ggl:A, 6ggl:B, 5gue:A, 5gue:B, 5gue:C, 5gue:D, 8qws:A, 8qws:B
2 2l51:A 102 62 0.0643 0.1765 0.2903 0.35 2l51:B
3 4b29:A 195 93 0.0929 0.1333 0.2796 1.4
4 3k2s:A 243 59 0.0571 0.0658 0.2712 1.7 6cch:A, 3k2s:B, 7rsc:D, 7rsc:E, 7rse:D, 7rse:E, 6w4e:D
5 6djk:A 376 37 0.0464 0.0346 0.3514 2.1
6 3cke:D 284 85 0.0786 0.0775 0.2588 2.1
7 8h6u:A 338 120 0.1071 0.0888 0.2500 2.4 8h6u:B, 8h6u:C, 8h6u:D
8 3mmt:A 341 24 0.0429 0.0352 0.5000 4.3 3mmt:B, 3mmt:C, 3mmt:D
9 6vyd:A 304 64 0.0679 0.0625 0.2969 4.8 6vyd:B, 6w26:I, 6w26:A
10 5yhw:A 453 50 0.0607 0.0375 0.3400 5.0 5yhw:B, 5yhw:C, 5yhw:F
11 1xrs:A 516 77 0.0679 0.0368 0.2468 8.5
12 1dgp:A 290 95 0.0964 0.0931 0.2842 8.7 1dgp:B
13 2vk1:A 562 67 0.0750 0.0374 0.3134 8.7 1pvd:A, 1pvd:B, 1pyd:A, 1pyd:B, 1qpb:A, 1qpb:B, 2vk1:B, 2vk1:C, 2vk1:D, 2vk8:A, 2vk8:B, 2vk8:C, 2vk8:D, 2w93:A, 2w93:B, 2w93:C, 2w93:D
14 4dz4:B 323 48 0.0607 0.0526 0.3542 9.1 4dz4:A, 4dz4:C, 4dz4:D, 4dz4:E, 4dz4:F
15 4dzh:A 439 90 0.0857 0.0547 0.2667 9.1
16 5imi:A 306 60 0.0571 0.0523 0.2667 10.0 3bnx:A, 3bnx:B, 3bnx:C, 3bnx:D, 3bny:A, 3bny:B, 3bny:C, 3bny:D, 3cke:A, 3cke:B, 3cke:C, 5imi:B, 5imi:C, 5imi:D, 5imn:A, 5imn:B, 5imn:C, 5imn:D, 5imp:A, 5imp:B, 5imp:C, 5imp:D, 5in8:A, 5in8:B, 5in8:C, 5in8:D, 5ivg:A, 5ivg:B, 5ivg:C, 5ivg:D, 4kux:A, 4kux:B, 4kux:C, 4kux:D, 4kvd:A, 4kvd:B, 4kvd:C, 4kvd:D, 4kvi:A, 4kvi:B, 4kvi:C, 4kvi:D, 4kvw:A, 4kvw:B, 4kvw:C, 4kvw:D, 4kvy:A, 4kvy:B, 4kvy:C, 4kvy:D, 4kwd:A, 4kwd:B, 4kwd:C, 4kwd:D, 2oa6:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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