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BioLiP
>protein
DIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8khf:4 75 75 1.0000 1.0000 1.0000 3.44e-47 8ki3:4, 8ki3:5, 6tt7:3, 6tt7:4
2 5bps:B 75 69 0.6000 0.6000 0.6522 2.39e-25 5bps:C, 5bps:A, 5bps:D, 5bps:E, 5bps:K, 5bps:L, 5bps:M, 5bps:N, 5bps:O, 5bq6:A, 5bq6:B, 5bq6:C, 5bq6:E, 5bq6:K, 5bq6:L, 5bq6:M, 5bq6:O, 5bqa:A, 5bqa:B, 5bqa:D, 5bqa:E, 5bqa:K, 5bqa:L, 5bqa:M, 5bqa:N, 5bqa:O, 5bqj:B, 5bqj:C, 5bqj:A, 5bqj:D, 5bqj:E, 5bqj:K, 5bqj:L, 5bqj:M, 5bqj:O, 6cp5:O, 6cp5:P, 4f4s:B, 4f4s:C, 4f4s:A, 4f4s:D, 4f4s:E, 4f4s:K, 4f4s:L, 4f4s:M, 4f4s:N, 4f4s:O, 3u32:L, 3u32:M, 3u32:O
3 8aph:P1 78 68 0.5200 0.5000 0.5735 8.75e-23 8apj:P1
4 3zk1:A 89 66 0.3067 0.2584 0.3485 9.33e-07 3zk1:B, 3zk1:D, 3zk1:G, 3zk1:H, 3zk1:J, 3zk1:N, 3zk1:O, 3zk1:P, 3zk1:R, 3zk1:S, 3zk1:U, 3zk2:A, 3zk2:C, 3zk2:E, 3zk2:H, 3zk2:I, 3zk2:K, 3zk2:M, 3zk2:N, 3zk2:O, 3zk2:P, 3zk2:L
5 2wie:A 82 59 0.2667 0.2439 0.3390 3.91e-04 2wie:B, 2wie:C, 2wie:D, 2wie:E, 2xqs:D, 2xqt:A, 2xqt:B, 2xqt:C, 2xqt:D, 2xqt:E, 2xqu:A, 2xqu:B, 2xqu:C, 2xqu:D, 2xqu:E
6 4cbj:B 69 41 0.2000 0.2174 0.3659 0.009 4cbj:C, 4cbj:F, 4cbj:J, 4cbj:L, 4cbj:M, 4cbk:F, 4cbk:G, 4cbk:J, 4cbk:L, 2x2v:D, 2x2v:F, 2x2v:G, 2x2v:H, 2x2v:J, 2x2v:M
7 4c7y:A 907 60 0.2667 0.0221 0.3333 0.74 4c7z:A, 4c80:A, 3fah:A, 3fc4:A, 3l4p:A, 1sij:A, 4us8:A, 4us9:A, 4usa:A, 1vlb:A
8 4gu7:A 310 27 0.1467 0.0355 0.4074 0.80 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
9 7bok:A 309 25 0.1200 0.0291 0.3600 0.96 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
10 4fbg:A 399 62 0.2933 0.0551 0.3548 1.6 4fbg:E, 4fbg:G, 4fbg:H, 4fbg:I, 4fbg:K, 4fbg:M, 4fbg:P
11 8ot8:A 412 22 0.1600 0.0291 0.5455 1.8 8ot8:B, 8ot8:C, 8ot8:D
12 6wlw:0 204 55 0.2667 0.0980 0.3636 5.5 6wm2:0
13 7tao:E 159 67 0.3467 0.1635 0.3881 6.5 7tao:F, 7tao:G, 7tao:H, 7tao:I, 7tao:J, 7tao:K, 7tao:L, 7tap:E, 7tap:F, 7tap:G, 7tap:H, 7tap:I, 7tap:J, 7tap:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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