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BioLiP
>protein
DICRLCLRGVSGAQMCLQIFDVDSGESKVAEVLRQHFWFEVLPNDEISKVICNVCWTQVSEFHQFYVSIQEAQVIYATTS

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1pzw:A 80 80 1.0000 1.0000 1.0000 8.68e-56
2 4wrk:A 158 56 0.1750 0.0886 0.2500 0.48 4gv8:A, 4gv8:C, 4gv8:B, 4gv8:D, 4gv8:F, 4gv8:E, 4wrk:B, 4wrk:C, 4wrk:D, 4wrk:E, 4wrk:F
3 6zj3:ST 148 51 0.2000 0.1081 0.3137 2.1
4 9b4h:A 1908 14 0.0875 0.0037 0.5000 3.8 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
5 5lnk:z 69 37 0.1375 0.1594 0.2973 6.8
6 1yfr:A 448 68 0.2250 0.0402 0.2647 6.8 1yfr:B, 1yfs:A, 1yfs:B, 1ygb:A
7 1vh3:B 246 36 0.1375 0.0447 0.3056 8.3 1vh3:A
8 5jlb:A 248 37 0.1500 0.0484 0.3243 8.7 7ea8:L, 4fmu:A, 4h12:A, 6j9j:A, 5jjy:A, 5jle:A, 5lss:A, 5lsx:A, 5lsy:A, 5lsz:A, 5lt6:A, 5lt6:B, 5lt7:A, 5lt8:A, 7lzb:A, 7lzd:A, 7lzf:A, 8q5p:A, 7ty2:A, 7ty3:A, 5v21:A, 5v22:A, 6vdb:A
9 2bkl:B 677 50 0.1875 0.0222 0.3000 9.1 2bkl:A
10 1jf0:A 192 44 0.2125 0.0885 0.3864 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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