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BioLiP
>protein
DIAGLTPCSESKAYNKLERKELKVLDKRLKQYEPGSAPYLALQATKERTENRFKTYAKQGLLCGNDGLPHLISDPGLALR
FNHAGEVFIPTFGFLYVAGYIGHVGRQYIILSKEDAKPTDKEIILDVPLALKLAFQGWAWPLASIQELRNGSLLEKDENI
TVS

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6qph:F 163 163 1.0000 1.0000 1.0000 4.81e-120 6rhz:F, 6sl5:F, 6yxr:F
2 7bgi:F 165 163 0.7791 0.7697 0.7791 1.46e-92 7blx:F, 7d0j:F, 7dz7:F, 7dz8:F, 8h2u:F, 6ijj:F, 6ijo:F, 6jo5:F, 6jo6:F, 7r3k:F, 7wyi:F, 7wzn:F, 7zq9:F, 7zqc:F, 7zqd:F, 7zqd:F2
3 8cmo:F 165 163 0.6810 0.6727 0.6810 4.84e-79
4 6igz:F 163 163 0.6380 0.6380 0.6380 2.02e-76
5 7a4p:F 165 163 0.6319 0.6242 0.6319 4.29e-74 6zzx:F, 6zzy:F
6 8htu:F 161 163 0.5644 0.5714 0.5644 1.10e-60 7ksq:F, 7kux:F, 6l35:F, 7xqp:F
7 7yca:F 165 161 0.5828 0.5758 0.5901 1.51e-60
8 5l8r:F 154 157 0.5276 0.5584 0.5478 6.76e-57 7dkz:F, 4rku:F, 4y28:F, 6yac:F, 6yez:F, 6zoo:F, 6zxs:F
9 8wm6:F 161 163 0.4969 0.5031 0.4969 1.89e-54 8wmj:F, 8wmv:F, 8wmw:F
10 7y7b:F 160 162 0.4908 0.5000 0.4938 3.60e-54 7y8a:F
11 7dr0:F 161 163 0.4908 0.4969 0.4908 1.89e-53 7dr1:F, 7dr2:aF, 7dr2:bF, 7dr2:cF, 7dr2:dF
12 7y5e:FN 158 162 0.4969 0.5127 0.5000 1.48e-52 7y5e:F2, 7y7a:F7, 7y7a:Fo
13 6ly5:f 162 155 0.5031 0.5062 0.5290 1.81e-52 3lw5:F, 2o01:F, 2wsc:F, 2wse:F, 2wsf:F, 4xk8:F, 4xk8:f
14 6l4u:F 161 163 0.4785 0.4845 0.4785 3.49e-52
15 7wfe:BF 154 157 0.4908 0.5195 0.5096 4.45e-51 8j6z:F, 8j7a:F, 8j7b:F, 7wfd:AF, 7wg5:AF, 7wg5:BF, 8wgh:F
16 5zji:F 158 160 0.5031 0.5190 0.5125 4.24e-50
17 8bcv:F 158 160 0.4908 0.5063 0.5000 1.16e-49 7ew6:F, 7ewk:F, 7f9o:F, 7f9o:j
18 7blz:F 155 159 0.4785 0.5032 0.4906 9.06e-49 6fos:F, 5zgb:F, 5zgh:F
19 8wey:F 158 159 0.4417 0.4557 0.4528 4.32e-45
20 6kif:F 136 163 0.4356 0.5221 0.4356 6.32e-39 6kif:R, 6kif:j, 6kig:F, 6kig:R, 6kig:j
21 4fe1:F 141 163 0.4110 0.4752 0.4110 3.10e-37 7fix:F1, 7fix:F2, 7fix:F3, 1jb0:F, 6k33:bF, 6k33:aF, 6k33:cF, 7m75:F, 7m76:F, 7m78:F, 3pcq:F, 6pfy:Q, 6pfy:F, 6pfy:d, 6pgk:Q, 6pgk:F, 6pgk:d, 6tra:F, 6trc:F, 6trc:f, 6trc:6, 6trd:F, 6trd:f, 6trd:6, 5zf0:F1, 5zf0:F2, 5zf0:F3, 5zf0:F4, 5zf0:F6, 5zf0:F5
22 7qco:F 141 161 0.4049 0.4681 0.4099 3.17e-33 7qco:O, 7qco:o, 7qco:f
23 6hqb:F 143 163 0.4049 0.4615 0.4049 4.35e-31 8am5:f, 8asl:f, 8asp:f, 4kt0:F, 6nwa:F, 6nwa:f, 6nwa:Q, 5oy0:F, 5oy0:f, 5oy0:6, 7umh:F, 7umh:Q, 7umh:f, 6uzv:F, 6uzv:6, 6uzv:f
24 6vpv:F 141 163 0.4049 0.4681 0.4049 2.09e-30 6vpv:f, 6vpv:6
25 6jeo:bF 141 161 0.3865 0.4468 0.3913 9.65e-30 6jeo:aF, 6jeo:cF, 6jeo:dF, 6k61:F, 6k61:f, 6tcl:F1, 6tcl:F2, 6tcl:F, 6tcl:FF, 7y3f:F
26 8jw0:f 185 159 0.3620 0.3189 0.3711 2.54e-27
27 8jjr:f 169 147 0.3252 0.3136 0.3605 3.62e-23
28 8jze:f 184 157 0.3374 0.2989 0.3503 3.96e-23 8jzf:f
29 7lx0:Q 135 127 0.3129 0.3778 0.4016 3.09e-22 7lx0:f, 7lx0:F, 6pnj:Q, 6pnj:f, 6pnj:F
30 7s3d:F 124 129 0.3129 0.4113 0.3953 1.04e-20 7s3d:Q, 7s3d:f
31 4l6v:F 125 109 0.2577 0.3360 0.3853 2.07e-19 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
32 7f4v:aF 151 156 0.3067 0.3311 0.3205 4.10e-19 7f4v:bF, 7f4v:cF
33 7dwq:F 103 127 0.2699 0.4272 0.3465 5.64e-10
34 6h57:A 795 40 0.0798 0.0164 0.3250 1.6
35 7d63:RZ 839 40 0.0798 0.0155 0.3250 1.6 7d4i:RZ, 7d5t:RZ, 7mqj:A
36 7aju:JD 811 40 0.0798 0.0160 0.3250 1.7 6zqd:JD, 6zqe:JD, 6zqf:JD
37 5oql:S 237 96 0.1472 0.1013 0.2500 2.0 6rxt:CB, 6rxu:CB, 6rxv:CB, 6rxx:CB, 6rxy:CB, 6rxz:CB
38 5ch8:A 270 70 0.1350 0.0815 0.3143 3.4
39 5i2l:A 105 42 0.0798 0.1238 0.3095 4.5 5h0p:A, 5i2o:A, 5i2q:A, 7ygy:A
40 1iom:A 374 57 0.1166 0.0508 0.3333 5.0 1ixe:A, 1ixe:B, 1ixe:C, 1ixe:D
41 5hy5:A 511 85 0.1227 0.0391 0.2353 9.5 5hy5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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